Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40254
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      30   2.0  
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)                      29   3.5  
SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 16  LTGCYNASSLMLYFLALFTIYVIANMCHLLVILFSLAFMHILFRLRLAII*YY*STFLSK 195
           L  CY   +L++     FT+ V+  +C +L+++  L F        L ++ Y   T L  
Sbjct: 129 LVMCYLCCTLLVMDYLCFTLLVMGYLCCILLVMGCLCF-------TLLVMGYLCCTLLVM 181

Query: 196 KYVICS*LVI 225
            Y+ CS LV+
Sbjct: 182 GYLCCSLLVM 191


>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 27  LQCFLFNVIFLGAFYHLRYCQHVSFISY 110
           L CFLF+V  +GA++H R   HV  + Y
Sbjct: 244 LLCFLFDVHVMGAYFHQR-LSHVLLLIY 270


>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
          Length = 1865

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 378 YFCVPCILCHKDRSYSPYTYCIIVST 301
           Y C+PC  CH D       +C+IV T
Sbjct: 40  YTCLPCEKCHADTCVVKPGFCLIVVT 65


>SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 63  AFYHLRYCQHVSFISYIVFTRIYAYTI*IKISYNLI-LLINFF 188
           A Y   Y +  S+I+Y   T  Y YTI +KI Y  +  LI+ F
Sbjct: 160 ADYMFHYGKVFSYINYYTNTAAYIYTILLKIVYITVPTLISLF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,417
Number of Sequences: 59808
Number of extensions: 290230
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)