Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40254
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    30   6.7  
AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    30   6.7  
AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP...    30   6.7  
AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protei...    30   6.7  
AK096901-1|BAC04889.1|  127|Homo sapiens protein ( Homo sapiens ...    30   8.9  

>AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 372  CVPCILCHKDRSYSPYTYCIIVSTFICCDSY 280
            C PC +C  +++YSP   C    TF   D Y
Sbjct: 1256 CSPCEMCTVNKAYSPKETCNPSDTFFPSDGY 1286


>AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 372  CVPCILCHKDRSYSPYTYCIIVSTFICCDSY 280
            C PC +C  +++YSP   C    TF   D Y
Sbjct: 1256 CSPCEMCTVNKAYSPKETCNPSDTFFPSDGY 1286


>AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP1
            protein protein.
          Length = 2156

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 372  CVPCILCHKDRSYSPYTYCIIVSTFICCDSY 280
            C PC +C  +++YSP   C    TF   D Y
Sbjct: 1256 CSPCEMCTVNKAYSPKETCNPSDTFFPSDGY 1286


>AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protein 1
            protein.
          Length = 2156

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 372  CVPCILCHKDRSYSPYTYCIIVSTFICCDSY 280
            C PC +C  +++YSP   C    TF   D Y
Sbjct: 1256 CSPCEMCTVNKAYSPKETCNPSDTFFPSDGY 1286


>AK096901-1|BAC04889.1|  127|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39582 fis, clone SKMUS2004667. ).
          Length = 127

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 327 MDYRTGPYDTEYM--EHKNKITAATRNFKYFFILLF*R 434
           +D+R G  + E +  +H+ K  +  RNF ++FI++F R
Sbjct: 33  VDFREGYLEEESLKVQHRRKTVSQYRNFIFYFIIIFLR 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,100,193
Number of Sequences: 237096
Number of extensions: 1339148
Number of successful extensions: 1841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)