Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40253
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   2.0  
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    29   2.7  
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010...    28   8.1  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 181 FISRMNPYSPELNYFLSYQYCR 246
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 RRLPIDAPAQHADDSMDPLDVPQGSTAPNAPPD 524
           R+ P+D   QH DDS   L  P   T  NAP D
Sbjct: 321 RKPPVDEKVQHKDDS--KLQNPAKKTTANAPSD 351


>10_06_0112 +
           10899079-10900656,10900761-10900920,10900948-10901028,
           10901264-10901517
          Length = 690

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 626 EQTRCYYYNYGSISRFHPRRGN 691
           E+ RC+Y  Y  I+  HP  GN
Sbjct: 607 EKVRCFYCEYKGINIIHPADGN 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,730
Number of Sequences: 37544
Number of extensions: 441996
Number of successful extensions: 1067
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)