Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40253
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 31 0.67
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 30 1.6
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 30 2.1
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8) 30 2.1
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 30 2.1
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 30 2.1
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 30 2.1
SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12) 30 2.1
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_4788| Best HMM Match : rve (HMM E-Value=0) 30 2.1
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 30 2.1
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 30 2.1
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 30 2.1
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 30 2.1
SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 6.3
SB_19109| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 6.3
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 121 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I E C + G
Sbjct: 318 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 121 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 261 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 314
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFI--CE 628
R RK ++T H + H+ GCI TF W P+ E+K++I CE
Sbjct: 172 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCE 217
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 844 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 897
>SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 364
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 264 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 317
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 641 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 694
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 70 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 123
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 957 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 1010
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 121 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 174
>SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 270
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 88 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 141
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 356 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 409
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 214 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 267
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 764 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 817
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 94 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 94 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 380 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 433
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 658
R RK ++T H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 235 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 288
>SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 934
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFI--CE 628
R RK ++T H + H+ GCI TF W P+ E+K++I CE
Sbjct: 889 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCE 934
>SB_19109| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 305
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 485 RTTRKHCSQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFI--CE 628
R RK ++T H + H+ GCI TF W P+ E+K++I CE
Sbjct: 260 RALRKELMEKT--HSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCE 305
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +2
Query: 533 EHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 652
+H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 884 DHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 210 RAQLFPVLSVLQIIRLQLASFETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMS 389
R + PVLS L + + S TK+ A+ +T L + G + +
Sbjct: 1075 RLREVPVLSTLFRSEVHVVSTPTKDAAEFVTIQLKVKENSAQQMQIEGTFFSSGQ--TVK 1132
Query: 390 TGLPFNATFNYM-RRLPIDA 446
P N TFNY R+L I+A
Sbjct: 1133 RDFPINITFNYQTRQLIIEA 1152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,867,616
Number of Sequences: 59808
Number of extensions: 515789
Number of successful extensions: 1631
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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