Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40252
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    51   2e-07
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.8  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +1

Query: 268 LVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY 405
           L+ E G+PR DIDV  +R ARH+II L+NDH+++   I++ + KV+
Sbjct: 36  LLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKVF 81



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 507 FATISFVDKGSPAEEAGLRAHDELVQFGSVNYQNFKDVSQIMRIVSHSIN 656
           F  +  V   SPA+EAGL   DEL     V+ QN   +S++   +S+++N
Sbjct: 129 FCVVDSVAVESPAQEAGLCIGDEL-----VHVQNVTSLSELPTFISNNVN 173


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 524 KTDSSKVGSLTVSSFLKTG*PFKHEFISSLSIPGLSIKSS 405
           K D +K  S+T+ S   +     H F   LS+PG  IKS+
Sbjct: 703 KLDLAKANSITLKSEPSSA-VSTHSFEVHLSMPGTQIKSA 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,988
Number of Sequences: 5004
Number of extensions: 52300
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)