Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40252
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0147 - 15099406-15099446,15100171-15100341,15101032-151011...    45   6e-05
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    34   0.12 
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    29   3.3  
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879...    28   7.7  

>09_04_0147 -
           15099406-15099446,15100171-15100341,15101032-15101139,
           15101974-15102034,15102126-15102266
          Length = 173

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +1

Query: 256 LKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGI 393
           + G LVD  G+PR DID+  V   R K+  L+NDHK +   IE+ +
Sbjct: 39  ITGGLVDAEGFPRSDIDIPAVLAQRRKLAELRNDHKDITNKIEKNL 84



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 507 FATISFVDKGSPAEEAGLRAHDELVQFGSV 596
           FA I  +  GSPA   GL+  DE+V+FG+V
Sbjct: 129 FAIIDELTDGSPAAVDGLQLWDEIVKFGNV 158


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 504 NFATISFVDKGSPAEEAGLRAHDELVQFGSVNYQNFKDVSQIM 632
           N   +  V  GSPAE AG R  D +V+F     ++ K++  IM
Sbjct: 380 NGVLVPMVTPGSPAEHAGFRPGDVVVEFDGKLVESIKEIIDIM 422


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 409 DLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTLLLSVLWIKV 537
           +L D   +D ++ +S  NG+     D+ VND   + ++ W+ +
Sbjct: 598 NLDDGSAVDIDDADSVDNGFSGVSSDDDVNDEPRVRNISWLTI 640


>04_04_1113 -
           30986757-30986780,30986781-30987273,30987437-30987959,
           30988361-30988615,30988812-30988926,30989026-30989078,
           30989213-30989265,30989419-30989473,30989549-30989599,
           30989776-30990024,30990122-30990350,30990994-30991305
          Length = 803

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/96 (26%), Positives = 48/96 (50%)
 Frame = +1

Query: 298 DIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINSCLNGYPVF 477
           D++ YEV  A+H     + D  + M L  + +A V+ D+  SP       +   + YP+ 
Sbjct: 88  DVEGYEVSVAQHIEDSEEFDFGRTMFLALQTLAVVFGDIGISP---LYTFDVMFSKYPIL 144

Query: 478 KKDETVNDPTLLLSVLWIKVHRLKRLVFVLTMNWSN 585
            +++ +   +L+L  L I +  +K   +VL + W+N
Sbjct: 145 GEEDVLGALSLVLYTL-ISMPLVK---YVLVVLWAN 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,152
Number of Sequences: 37544
Number of extensions: 294916
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)