Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40252
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)               70   2e-12
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)                   34   0.090
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.5  
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)                   30   1.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)             28   5.9  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   5.9  
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/50 (62%), Positives = 40/50 (80%)
 Frame = +1

Query: 256 LKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGIAKVY 405
           ++ +L+D  GYPRDDIDVY VR AR++IICLQNDHK  M+ IE G+ KV+
Sbjct: 38  MEENLIDAEGYPRDDIDVYTVRIARNRIICLQNDHKAKMKEIEEGLHKVH 87



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +3

Query: 507 FATISFVDKGSPAEEAGLRAHDELVQFGSVNYQNFKDVSQIMRIVSHS 650
           F  +  V   SPA +AGL   D +++FGS++ QNF+ +  I  +V HS
Sbjct: 131 FLRVESVTPHSPAAKAGLEVGDNILKFGSLSAQNFQGLQNIASVVQHS 178


>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
          Length = 718

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 516 ISFVDKGSPAEEAGLRAHDELVQFGSVNYQNFKDVSQIMRI 638
           I  + +GSPAE A LR  DE+++    + +NF     I+ I
Sbjct: 70  IDSIAQGSPAERANLRIGDEILEVNGTSVENFSHAEVILSI 110


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 516 ISFVDKGSPAEEAGLRAHDELVQFGSVNYQN 608
           +  VDKGSPA +A L+  D +++   +N +N
Sbjct: 318 VRLVDKGSPAAQARLKPGDHILEINGLNVRN 348



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 525 VDKGSPAEEAGLRAHDELVQFGSVNYQN 608
           VDKGSPA +A L+  D +++   +N +N
Sbjct: 489 VDKGSPAAQARLKPGDHILEINGLNVRN 516


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 343 CLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINS 453
           C+ N H +  Q I +    VYE  ++SP + ++EINS
Sbjct: 307 CVMNHHPQHQQRIRQAYT-VYEKQVNSPRLPNDEINS 342


>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
          Length = 217

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 516 ISFVDKGSPAEEAGLRAHDELVQFGSVNYQNFKDVSQIMR 635
           ++FV K SPA   GLR  D+++Q    N   F D  + M+
Sbjct: 68  VAFVHKDSPAALGGLRFGDQILQIDGENMAGF-DTDKAMK 106


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 463  GYPVFKKDETVNDPTLLLSVLWIKVHRLKRLVFVLTMNWSNL 588
            GYP  K  E  N     LSV W  ++     VF L+++W+ L
Sbjct: 1652 GYPQPKSSENGNHNVFALSVSWRYLYLCAIFVFGLSVSWNYL 1693


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 YEDLIDSPGIDSEEINSCLNGYPVFKKDETV 495
           Y + +D  G+DS  I  CL  + VF+  + V
Sbjct: 227 YNEKLDFAGLDSNRIKECLLSFMVFEASQRV 257


>SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)
          Length = 321

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 290 GYPSSSTKEPFKQHCWTLIRRNDHESN 210
           G+ SS+ +E FK+ CW   +R  +E+N
Sbjct: 286 GFQSSNYREGFKKLCWCYSQRLGNENN 312


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 YEDLIDSPGIDSEEINSCLNGYPVFKKDETV 495
           Y + +D  G+DS  I  CL  + VF+  + V
Sbjct: 202 YNEKLDFAGLDSNRIKECLLSFMVFEASQRV 232


>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 274 DELGYPRDDI--DVYEVRHARHKIICLQNDHKKVMQLIERGIAKVYEDL 414
           D +   R D+  D+ ++   R K++  +N++K  ++L++RG  +  EDL
Sbjct: 188 DRVTPSRQDLLADMAKITRERDKLLKEKNNYKDELKLLDRGFFEEVEDL 236


>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 220 WSLRRISVQQCCLKGSLVDELGYPRDDIDVYEVRHA 327
           WS RR SV    LKG    EL   R+  ++ E R A
Sbjct: 261 WSARRNSVISSALKGLSTPELSISREASNLLEARKA 296


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 334 KIICLQNDHKKVMQLIERGIAKVYEDL-IDSPGIDSEEINSCLN 462
           K+  L+N+H K+ Q  ER   KV +D+ +   G  + +I S LN
Sbjct: 534 KVRKLENEHDKICQTSERDEQKVSDDVSMTIEGSQNRDIPSNLN 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,847
Number of Sequences: 59808
Number of extensions: 375991
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)