Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40252
         (665 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   1.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   1.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 331  DARVSLHKRLCHHEGILAHQLKNPSSNIVGR 239
            D  ++L +   H  G+L+H+L +   N +GR
Sbjct: 1469 DTTLALERSTLHATGLLSHRLYDVLGNEIGR 1499



 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 358  HKKVMQLIERGIAKVYEDLIDSPGIDSEE 444
            H K+M  +++  A++ +D+ D P    EE
Sbjct: 1000 HGKIMDEVDKIKAQIEQDIRDQPNAPEEE 1028


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 331  DARVSLHKRLCHHEGILAHQLKNPSSNIVGR 239
            D  ++L +   H  G+L+H+L +   N +GR
Sbjct: 1470 DTTLALERSTLHATGLLSHRLYDVLGNEIGR 1500



 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 358  HKKVMQLIERGIAKVYEDLIDSPGIDSEE 444
            H K+M  +++  A++ +D+ D P    EE
Sbjct: 1001 HGKIMDEVDKIKAQIEQDIRDQPNAPEEE 1029


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,850
Number of Sequences: 2352
Number of extensions: 12570
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)