Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40252
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    40   0.001
At3g01680.1 68416.m00099 expressed protein                             27   8.5  
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta...    27   8.5  

>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +1

Query: 256 LKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGI 393
           L G+L+D  G+PR+DID+  VR  R ++  L+++H ++ + I   I
Sbjct: 39  LSGNLIDSEGFPREDIDIPMVRTERRRLAELRSEHGEITEKINVNI 84



 Score = 31.9 bits (69), Expect = 0.39
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 507 FATISFVDKGSPAEEAGLRAHDELVQFGSV 596
           FA +  +++ SPA E GL+  D++++FG+V
Sbjct: 143 FAMVDEINESSPAAEGGLQLGDQVLKFGNV 172


>At3g01680.1 68416.m00099 expressed protein 
          Length = 740

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 346 LQNDHKKVMQLIE-RGIAKVYEDLIDSPGIDSEEINSCLNGYPVFKK 483
           +Q  H    + ++ RG+  + ED++D   +DSE+ N+ +   P   K
Sbjct: 47  IQQTHSPDAREVQVRGLLSLVEDILDRATLDSEDTNASMLPLPTEDK 93


>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
           putative / snRNP core SM-like protein, putative / U6
           snRNA-associated Sm-like protein, putative similar to
           SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
           LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
           SnRNP core SM-like protein SM-x5) [Homo sapiens]
          Length = 93

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 235 ISVQQCCLKGSLVDELGYPRDDIDV 309
           +SV+ C ++GS+V  +  P+D +DV
Sbjct: 55  LSVRNCFIRGSVVRYVQLPKDGVDV 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,903
Number of Sequences: 28952
Number of extensions: 260085
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)