Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40251
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.9  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 319 LKIQKYIINEYNF 357
           +K+QK+I N+YNF
Sbjct: 550 MKLQKFINNDYNF 562


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 505 NDSLFSIINQYHFLSF 458
           +D+   I+NQ+H L F
Sbjct: 476 DDAFIGIVNQFHILQF 491


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 PKRHKTNSKIYVIRHFNLYLCGHVV 205
           P R++   +IY + +   Y+ G+VV
Sbjct: 781 PNRYREAKQIYKVGNVQAYIDGNVV 805


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 415 AHRKSRKYTIIALKLMNFMENYIH 344
           ++ KS+KY    L  +NF  NY++
Sbjct: 41  SNNKSKKYFEQTLNELNFNLNYVN 64


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
          protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 68 FVYGCIKTLTRHKNTYCPLIC 6
          +V G + T+T   N +C   C
Sbjct: 29 YVIGLMNTMTHTTNAFCLPFC 49


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
          protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 68 FVYGCIKTLTRHKNTYCPLIC 6
          +V G + T+T   N +C   C
Sbjct: 28 YVIGLMNTMTHTTNAFCLPFC 48


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 557 KVYFPIYLRPNKFY 598
           +VY P+Y +P + Y
Sbjct: 234 EVYIPLYQQPERHY 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,674
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)