Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40251
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    32   0.36 
At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206...    32   0.36 
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    29   2.5  
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    28   4.4  
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            28   4.4  
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    28   5.9  

>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 258 FCTFDCSVPNIYLFYKFCTTCPHK*RLKCL 169
           FC   C + N+   Y FCTTC  K   +C+
Sbjct: 109 FCCSACKITNLGTAYYFCTTCRKKFHKECV 138


>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
           Protein of unknown function (DUF715)
          Length = 453

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 452 KKKRKKMVLINY*EKGIIDVATRKWVLYLFLNSKLKVYFPIYLRPNKFYLKA 607
           K K  +  ++ +  K IID    KWV    LNSKL  Y P  + P    L A
Sbjct: 394 KMKPMERAVLGFKCKQIIDAGRMKWVKKHGLNSKLVKYIPASISPENTLLIA 445


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 258 FCTFDCSVPNIYLFYKFCTTCPHK*RLKCL 169
           FC   C + N+   Y FC TC  K   +C+
Sbjct: 31  FCCSACKLTNLGTAYYFCATCRKKFHKECV 60


>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 530 LYLFLNSKLKVYFPIYLRPNKFYLKAL 610
           ++LFLNSK K YF   L+P+K    A+
Sbjct: 30  VFLFLNSKCKRYFHNKLKPSKLAWTAM 56


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 530 LYLFLNSKLKVYFPIYLRPNKFYLKAL 610
           ++LFLNSK K YF   L+P+K    A+
Sbjct: 30  VFLFLNSKCKRYFHNKLKPSKLCWTAM 56


>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 523 FSGRDVNDSLFSIINQYHFLSFFFNKII 440
           FSG D N +LF + N YH  S F NKI+
Sbjct: 300 FSGED-NVALFLLTNAYHSDSDFGNKIL 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,655,527
Number of Sequences: 28952
Number of extensions: 209897
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)