Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40249
(294 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 54 5e-07
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 52 3e-06
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 41 0.005
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 38 0.032
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 38 0.042
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 37 0.098
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 36 0.13
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 36 0.23
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 36 0.23
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 35 0.30
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 35 0.40
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 34 0.52
UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza sa... 34 0.52
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 34 0.52
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 31 3.7
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 31 4.9
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 54.4 bits (125), Expect = 5e-07
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXX 180
Q+ ++G + H ++V+ + + Q+K + + ED LS G P
Sbjct: 2 QVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPEL 61
Query: 181 XXXT--VPLLGGKVHGSLARAGKVKGQPP 261
+ V ++GGKVHGSLARAGKV+GQ P
Sbjct: 62 ATLSLAVRVVGGKVHGSLARAGKVRGQTP 90
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 51.6 bits (118), Expect = 3e-06
Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 7 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXXXX 186
H + Q H L V GQE + QIK + +L +D L L G P
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHVASLEG---KDQVLLLAGTPLEDEVTLGQCEVEALS 60
Query: 187 XTVP---LLGGKVHGSLARAGKVKGQPP 261
+LGGKVHGSL AGKV+GQ P
Sbjct: 61 TLEVVGRMLGGKVHGSLDCAGKVRGQTP 88
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 41.1 bits (92), Expect = 0.005
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +1
Query: 199 LLGGKVHGSLARAGKVKGQPP 261
LLGGKVHGSLARAGKV+ Q P
Sbjct: 68 LLGGKVHGSLARAGKVRAQTP 88
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 38.3 bits (85), Expect = 0.032
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 1 QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCG 132
QL + Q H L+V GQE++ QIK + +L ++ ED + L G
Sbjct: 2 QLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAG 45
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 37.9 bits (84), Expect = 0.042
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQPP 261
GKVHGSLARAGKV+GQ P
Sbjct: 2 GKVHGSLARAGKVRGQTP 19
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 36.7 bits (81), Expect = 0.098
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQPP 261
GKVHGSLARAGKVK Q P
Sbjct: 2 GKVHGSLARAGKVKSQTP 19
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 36.3 bits (80), Expect = 0.13
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQPP 261
GK+HGSLARAGKVK Q P
Sbjct: 2 GKIHGSLARAGKVKNQTP 19
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 35.5 bits (78), Expect = 0.23
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 211 KVHGSLARAGKVKGQPP 261
KVHGSLARAGKV+GQ P
Sbjct: 1 KVHGSLARAGKVRGQTP 17
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 35.5 bits (78), Expect = 0.23
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 211 KVHGSLARAGKVKGQPP 261
KVHGSLARAGKV+GQ P
Sbjct: 1 KVHGSLARAGKVRGQTP 17
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 35.1 bits (77), Expect = 0.30
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Frame = +1
Query: 1 QLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP---XXXXXXXXXXX 171
QL +R H L+V G E+ IK + +L ED + L G+P
Sbjct: 18 QLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSPLPGEAILGQCGVEA 77
Query: 172 XXXXXXTVPLLGGKVHGSLARAGKVKGQPP 261
+LGG G+ R G ++ PP
Sbjct: 78 LATLEMVGRMLGGSGGGARMRTGALRQPPP 107
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 7 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 138
++R + H L+V G E++ Q K + +L + ED + L G+P
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSP 47
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 34.3 bits (75), Expect = 0.52
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 28 HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 138
H L V GQE + Q+K + +L + ED + L G P
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIP 39
>UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza
sativa|Rep: OSJNBb0048E02.10 protein - Oryza sativa
subsp. japonica (Rice)
Length = 423
Score = 34.3 bits (75), Expect = 0.52
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 15 RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 134
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 34.3 bits (75), Expect = 0.52
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQPP 261
GKVHGSLARAGKVK P
Sbjct: 2 GKVHGSLARAGKVKSATP 19
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 31.5 bits (68), Expect = 3.7
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQ 255
GKVHGSL RAGKV+ Q
Sbjct: 2 GKVHGSLTRAGKVRNQ 17
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 31.1 bits (67), Expect = 4.9
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 208 GKVHGSLARAGKVKGQPP 261
GK+HG+LA+AGKV+ Q P
Sbjct: 2 GKLHGTLAKAGKVRKQTP 19
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.315 0.137 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,439,862
Number of Sequences: 1657284
Number of extensions: 3884383
Number of successful extensions: 6942
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6940
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 9929495642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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