Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40249
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    37   7e-04
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    37   7e-04
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c...    23   9.3  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 36.7 bits (81), Expect = 7e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKVK Q P
Sbjct: 2   GKVHGSLARAGKVKSQTP 19


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 36.7 bits (81), Expect = 7e-04
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKVK Q P
Sbjct: 2   GKVHGSLARAGKVKSQTP 19


>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 111 VFIANCSKSTNAFLDLTNGLLAIDVQDVCRL 19
           +F+ N  +S N F DL +  L     D C+L
Sbjct: 86  IFVCNILESCNEFTDLGSARLLRLTFDSCQL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,118
Number of Sequences: 5004
Number of extensions: 15362
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)