Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40249
         (294 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           38   0.001
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.017
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   0.37 
12_02_1279 + 27510605-27513301                                         27   3.5  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    27   3.5  
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    26   6.1  
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    25   8.0  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKV+GQ P
Sbjct: 2   GKVHGSLARAGKVRGQTP 19


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 15  RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 134
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>02_02_0664 -
          12747888-12747900,12748161-12748229,12748332-12748395,
          12749540-12749558,12749777-12749843,12749934-12749953,
          12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 39 RQWPGVHWSDQGTHSY 86
          R WPG+HWSD  T  Y
Sbjct: 51 RIWPGLHWSDSSTPLY 66


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 260 GGCPLTLPARAKDPCTLPPSNGT 192
           GGC L LP R+   CT P +NG+
Sbjct: 307 GGCDLPLPCRSLGLCT-PGTNGS 328


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 8   ISEGNRHTSWTSMARS 55
           +S+GN H  WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  WSDQGTHSYSCCSWR*RPYSI 122
           W+D G  +YS  S R  PY++
Sbjct: 497 WADPGVDAYSAASLRASPYAV 517


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  DVNGQESIGQIKERIRTLAAVGDEDLTL 120
           D NG    G  +E +  L++VG+ED+T+
Sbjct: 56  DANGGGFSGGAEEGLYRLSSVGEEDMTV 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,462,529
Number of Sequences: 37544
Number of extensions: 116214
Number of successful extensions: 222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)