Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40249
         (294 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           34   0.017
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)                26   6.0  
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         25   8.0  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 211 KVHGSLARAGKVKGQPP 261
           KVHGSLARAGKVK Q P
Sbjct: 2   KVHGSLARAGKVKSQTP 18


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 140 KGAPHNDRVRSSSPTAARVRMRS 72
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)
          Length = 301

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 8   ISEGNRHTSWTSMARSPLVRSRN 76
           IS+G RH  W S A   L+R R+
Sbjct: 237 ISKGKRHLPWVSPAIKRLMRKRD 259


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 119 RVRSSSPTAARVRMRSLI*PMDSWPLTSR 33
           R+R  +  A  +R + ++  +DSWP +SR
Sbjct: 637 RIRIETRQAETLRSQRIVVSIDSWPRSSR 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,487,452
Number of Sequences: 59808
Number of extensions: 129436
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)