Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40249
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    41   1e-04
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 199 LLGGKVHGSLARAGKVKGQPP 261
           LLGGKVHGSLARAGKV+ Q P
Sbjct: 68  LLGGKVHGSLARAGKVRAQTP 88


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 117  SKVFIANCSKSTNAFLDLTNGLL 49
            S VF  +CS+++N FL  T+ +L
Sbjct: 2026 SNVFCNSCSQASNVFLSSTDEIL 2048


>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 199 LLGGKVHGSLARAGKVKGQPP 261
           L+ GK+HG    A   +G+PP
Sbjct: 385 LINGKIHGLFFTAQMCRGKPP 405


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 239 PARAKDPCTLPPSNGTV 189
           P RAK P T PPS  TV
Sbjct: 24  PCRAKRPTTEPPSTTTV 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,093,599
Number of Sequences: 27780
Number of extensions: 92527
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)