Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40249
         (294 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            38   0.001
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    38   0.001
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            38   0.001
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   1.6  
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f...    26   5.0  
At4g05145.1 68417.m00771 hypothetical protein                          25   6.6  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKV+GQ P
Sbjct: 2   GKVHGSLARAGKVRGQTP 19


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKV+GQ P
Sbjct: 2   GKVHGSLARAGKVRGQTP 19


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 208 GKVHGSLARAGKVKGQPP 261
           GKVHGSLARAGKV+GQ P
Sbjct: 2   GKVHGSLARAGKVRGQTP 19


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 7    HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 105
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
           factor (HB-9) identical to HD-Zip protein GB:CAA71854
           GI:2145358 from [Arabidopsis thaliana]
          Length = 841

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 60  WSDQGTHSYSCCSWR*RPYSI 122
           W+D G  +YS  S R  PY++
Sbjct: 488 WADYGVDAYSAASLRATPYAV 508


>At4g05145.1 68417.m00771 hypothetical protein
          Length = 219

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 45  WPGVHWSDQGTHSYSCCSW 101
           W  V W    T  YS CSW
Sbjct: 52  WHKVIWFSHATPKYSFCSW 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.137    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,793,050
Number of Sequences: 28952
Number of extensions: 85160
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)