Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    28   0.90 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   6.3  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   6.3  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   6.3  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   6.3  

>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 261 EETNSNNEMEDNNIKCF-KNSEEASLINDCLLRLSPPASKYDFLFSLSN 404
           E TNS+  ++ +N   + +NS +   + +    LSP  SK  FLF +SN
Sbjct: 203 ESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFLF-ISN 250


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 321 EEASLINDCLLRLSPPASKYDFLFSLSNTEGLCELFDIPC*L*IFIENAMTTF*RH 488
           E  SLI+    R+SP  S YD+L     ++ L E F   C + I + +  T + R+
Sbjct: 163 ENDSLISPFFFRISPNESAYDYLPPKKVSDILIEQFFFRCHMLINVLHRPTFYVRY 218


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = +3

Query: 279 NEMEDNNIKCFKNSEEASLINDCLLRLSPPASKYDFLFSLS 401
           +E+  N  + ++N+ ++++I++CL +      +Y++   LS
Sbjct: 364 DEVLANLTEAYENAPQSTIISECLAKYYIHLKEYEYAIGLS 404


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 255 EDEETNSNNEMEDNNIKCFKNSEEASLINDCLLRLSPPASKYD---FLFSLSNTEGLCEL 425
           ED++ NS+++ ++NN++    +E  +L  D   R    A   D     +S  + EGL + 
Sbjct: 604 EDDDWNSDSDNDENNVE-IVTAEAMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDW 662

Query: 426 F 428
           F
Sbjct: 663 F 663


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 564 FDNNTSTLHDYVIFILSTC 508
           FDN TSTL D +  ILS C
Sbjct: 538 FDNYTSTLKDPIDSILSFC 556


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = +3

Query: 252 VEDEETNSNNEMEDNN 299
           +EDEE +S+NEME+++
Sbjct: 622 LEDEENSSDNEMEESS 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,150
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)