Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891...    35   0.057
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294...    32   0.30 
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724     31   0.53 
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604...    30   1.6  
02_05_0667 + 30739612-30739783,30739872-30739957,30740832-307408...    28   4.9  
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786...    28   6.5  

>02_04_0115 -
           19888252-19888406,19888507-19888573,19888867-19889101,
           19889179-19889255,19889350-19889415,19889517-19889565,
           19889651-19889701,19889799-19889851,19889973-19890024,
           19890126-19890214,19890308-19890393,19890603-19890659,
           19890742-19890919,19891852-19891908,19892209-19892439
          Length = 500

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 15/62 (24%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   IKQSTKNVLDEPDNQDMCFVMDTEIQ--QCFQNDLVLVLEAPLGANLSIGTQPNKDRESN 174
           +++  + + ++ +NQ   +V + +I+   CFQN+ ++ ++AP G  L +   P+ D   +
Sbjct: 270 MREKLRGLTEDENNQRWLYVTEDDIKGLPCFQNETLIAIKAPHGTTLEV---PDPDEAGD 326

Query: 175 FL 180
           +L
Sbjct: 327 YL 328


>12_01_0377 -
           2939384-2939505,2939629-2939695,2940324-2940543,
           2940655-2940731,2940813-2940878,2940970-2941018,
           2941131-2941181,2941262-2941314,2941432-2941486,
           2941563-2941651,2941742-2941827,2941933-2941989,
           2942086-2942275,2943847-2944005
          Length = 446

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 1   IKQSTKNVLDEPDNQDMCFVMDTEIQQ--CFQNDLVLVLEAPLGANLSIGTQPNKDRESN 174
           ++   + + ++ +NQ   +V + +I+   CFQN  ++ ++AP G  L +   P+ D  ++
Sbjct: 232 MRDKLRGLTEDENNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGTTLEV---PDPDEVND 288

Query: 175 F 177
           +
Sbjct: 289 Y 289


>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
          Length = 353

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 252 VEDEETNSNNEMEDNNIKCFKNSEE 326
           +ED+ T+S+N ME+  + C K++EE
Sbjct: 189 MEDQATSSSNHMEEEEVSCEKSAEE 213


>04_03_0888 -
           20559435-20559565,20559674-20559740,20560217-20560477,
           20560783-20560848,20560971-20561019,20561441-20561491,
           20561568-20561620,20561743-20561794,20561867-20561955,
           20562044-20562135,20562298-20562351,20563411-20563462,
           20563775-20563963
          Length = 401

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 1   IKQSTKNVLDEPDNQDMCFVMDTEIQ--QCFQNDLVLVLEAPLGANLSI 141
           I++  + + ++  N    FV + +I+   CFQN+ ++ ++ P G  + +
Sbjct: 196 IREKMEELTEDESNHRWLFVTEDDIKGLPCFQNEALIAIKGPRGTTVEV 244


>02_05_0667 +
           30739612-30739783,30739872-30739957,30740832-30740837,
           30741521-30741586,30741664-30741834,30742032-30742202,
           30742457-30742612,30742705-30742851,30742964-30743035,
           30743122-30743652,30743739-30743926,30744781-30744838
          Length = 607

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 164 LSLFGCVPIDKFAPNGASKTKTRSF*KHCWISVSMTKHISWLSGSSKTF 18
           LSL G   + K +PNG    ++ SF     +S S +  I    G+S++F
Sbjct: 387 LSLGGADNMSKISPNGMLARRSPSFNSRSSLSTSSSLVIKHAKGTSRSF 435


>06_01_1009 -
           7859357-7859405,7860476-7860660,7860747-7860821,
           7860852-7861313,7861411-7861482,7861629-7861775,
           7861888-7862043,7862136-7862306,7862505-7862675,
           7862763-7862828,7864302-7864387,7864505-7864667
          Length = 600

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 164 LSLFGCVPIDKFAPNGASKTKTRSF*KHCWISVSMTKHISWLSGSSKTF 18
           LSL G   + K +PNG    ++ SF     +S S +  +    G+SK+F
Sbjct: 383 LSLGGADNMSKLSPNGLLARRSPSFHSRSSLSSSSSLVLKHAKGTSKSF 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,022,261
Number of Sequences: 37544
Number of extensions: 216951
Number of successful extensions: 440
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)