Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    28   5.0  
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)                28   5.0  
SB_24762| Best HMM Match : Astacin (HMM E-Value=0)                     28   6.6  
SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)                    28   6.6  

>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1371

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/30 (60%), Positives = 25/30 (83%)
 Frame = +3

Query: 348 LLRLSPPASKYDFLFSLSNTEGLCELFDIP 437
           LLRLSPP + +D+ F+L + EG+C+LFDIP
Sbjct: 276 LLRLSPPPADHDYYFNLDDNEGVCDLFDIP 305



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   IKQSTKNVLDEPDNQDMCFVMDTEIQQCFQNDLVLVLEAPLGANLSIG-TQPNKDRESNF 177
           ++QS KN+ ++P+N+ + FV   ++ + F+ D +L ++AP G  L +   +        +
Sbjct: 117 VQQSLKNISEDPENEKLAFVTYDDVCKSFKGDTLLAIQAPSGTQLEVPIPEQVPGMPKKY 176

Query: 178 LLHIKSSESMGVVLLNDK 231
            +H+KS      VLL +K
Sbjct: 177 QIHLKSQNGPIHVLLVNK 194


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 261 EETNSNNEMEDNNIKCFKNSEEASLINDCLLRLSP 365
           E+T++++  ++NNIK  KN  +++  ++ L RL P
Sbjct: 270 EDTHTSHPSKNNNIKKLKNGAKSTAKDESLKRLKP 304


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 499 YNIKCLQKVVIAFSIKIYNQQGISKSSHNPSVLLK 395
           Y +KC   +   + I +YN++   K+SH+  ++LK
Sbjct: 311 YRVKCEFLLCHQYPIGVYNEEMTIKTSHSSDLILK 345


>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   IKQSTKNVLDEPDNQDMCFVMDTEIQQC 84
           +KQ  K  LD+P NQD+   M T ++ C
Sbjct: 142 LKQDLKKYLDDPLNQDLIDFMQTLLKCC 169


>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 733

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 517 IYMFYMYNIKCLQKVVIAFSIKIYNQQGISKSSHNPSVLLK 395
           I  ++   +  L+     F I  +N QG   SSH+PS++ +
Sbjct: 263 ILTYFQQMLPILETDESLFCISAWNDQGYEHSSHDPSMMYR 303


>SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)
          Length = 522

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 535 LCNIYLIYMFYMYNIKCLQKVVIAF 461
           +CN  L+YM Y   ++CL+K V  F
Sbjct: 2   ICNGGLLYMLYKDPLRCLRKPVTVF 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,099,685
Number of Sequences: 59808
Number of extensions: 286745
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)