Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical p...    28   4.4  
U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical p...    28   5.8  
AL117204-2|CAB76734.1|  272|Caenorhabditis elegans Hypothetical ...    28   5.8  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical
           protein ZK418.2a protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 362 SSGFEVRFPVFLEQHRRIMRTF*YSLLIINLYRKRNDNFLKTFYVIHIKH 511
           S G ++R    + QH  +M +F YSL ++     + + FL  F V+ + H
Sbjct: 104 SVGQQIRSNCCVVQHNLVMHSFVYSLAVVK--DCKQEGFLCKFSVLPVSH 151


>U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical
           protein R144.13 protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 127 ANLSIGTQPNKDRESNFLLHIKSSESMGVVLLND 228
           A L IG  P  ++ S+ ++HIK S    VV+ ND
Sbjct: 48  ATLEIGFPPLSEKYSSRVIHIKPSVVHSVVIEND 81


>AL117204-2|CAB76734.1|  272|Caenorhabditis elegans Hypothetical
           protein Y116A8C.3 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 579 YLQRHFDNNTSTLHDYVIFILSTCFICIT*NV 484
           ++ R F + T  +H Y IF +  CF+ +  N+
Sbjct: 241 FMLRVFASTTFDIHFYYIFAVQLCFVVVVCNI 272


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 502 MYNIKCLQKVVIAFSIKIYNQQGISKSSH-NPSVLLKENRK 383
           ++NI    ++V  FS+++ ++  + +S H +P  +LK N+K
Sbjct: 382 IFNITLAPELVSHFSVRLIDRTALIRSGHISPVFVLKYNKK 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,468,499
Number of Sequences: 27780
Number of extensions: 232741
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)