Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 264 ETNSNNEMEDNNIKCFKNSEEASLINDCLLRL 359
           E+NSN  +    +    N+  A+ +N+CLL +
Sbjct: 460 ESNSNQFILMTTVNEGNNNMAATYMNECLLNI 491


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 402 CSRKTGNRTSKPED*VAKGNHLLMML 325
           C R+TG  T +    +  G+  ++ML
Sbjct: 379 CDRRTGKTTEENPKSIKSGDAAIVML 404


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 402 CSRKTGNRTSKPED*VAKGNHLLMML 325
           C R+TG  T +    +  G+  ++ML
Sbjct: 90  CDRRTGKTTEENPKSIKSGDAAIVML 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,315
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)