Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40247
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22220.2 68418.m02588 E2F transcription factor-1 (E2F1) ident...    30   1.0  
At5g22220.1 68418.m02587 E2F transcription factor-1 (E2F1) ident...    30   1.0  
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin...    28   5.4  
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi...    27   7.2  

>At5g22220.2 68418.m02588 E2F transcription factor-1 (E2F1)
           identical to E2F transcription factor-1 E2F1
           [Arabidopsis thaliana] gi|10443849|gb|AAG17608
          Length = 469

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 28  DEPDNQDMCFVMDTEIQQ--CFQNDLVLVLEAPLGANLSI 141
           ++ +N+ + FV + +I+   CFQN  ++ ++AP G  L +
Sbjct: 240 EDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEV 279


>At5g22220.1 68418.m02587 E2F transcription factor-1 (E2F1)
           identical to E2F transcription factor-1 E2F1
           [Arabidopsis thaliana] gi|10443849|gb|AAG17608
          Length = 469

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 28  DEPDNQDMCFVMDTEIQQ--CFQNDLVLVLEAPLGANLSI 141
           ++ +N+ + FV + +I+   CFQN  ++ ++AP G  L +
Sbjct: 240 EDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEV 279


>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
           protein contains Pfam heavy metal associated domain
           PF00403
          Length = 473

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 490 KCLQKVVIAFSIKIYNQQG--ISKSSHNPSVLLKENRKS 380
           K LQK+   F+ KI ++QG      S +PSVL+K+  KS
Sbjct: 29  KILQKIEGVFTTKIDSEQGKVTVSGSVDPSVLIKKLAKS 67


>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1184

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 55   FVMDTEIQ--QCFQNDLVLVLEAPLGANLSIGTQPNKDRESNFLLHI 189
            F+ D  IQ  + FQ+ L  V+EA L  ++   T PN +   + +LH+
Sbjct: 967  FISDLPIQLVKAFQSTLEEVVEADLLLHVVDSTAPNIEEHRSTVLHV 1013


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,381
Number of Sequences: 28952
Number of extensions: 201450
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)