Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40246
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    26   0.31 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   1.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   6.6  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 407 DQGSFQYYSPFLVSLILFSSKFIYPTQLRTTVL 309
           D+G   ++SPFLV+ + F +   Y T + T ++
Sbjct: 390 DKGDIFWFSPFLVANLAFVTIVTYETFVWTQIM 422


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 166 NRSELISTRFTGATGRAFLFHKVVNLIYS 252
           NRSELI+++        FL    V +I S
Sbjct: 9   NRSELITSKIVSFVNSIFLVMSAVTIILS 37


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 121 GTRLFSCASCDVNLTNRSELIS 186
           G++ F C  CD    N+S L S
Sbjct: 255 GSKPFQCNKCDYTCVNKSMLNS 276


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 121 GTRLFSCASCDVNLTNRSELIS 186
           G++ F C  CD    N+S L S
Sbjct: 13  GSKPFQCNKCDYTCVNKSMLNS 34


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 101 YFLIILEERDYFHAHHAMSILRIV 172
           YF I     ++   HH+ SI R +
Sbjct: 136 YFHIATTSNEFIRVHHSGSITRSI 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,911
Number of Sequences: 336
Number of extensions: 2552
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)