Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40246
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    46   5e-06
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.3  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 270 MLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILE 395
           M TGR +VR + C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 60  MSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 151 DVNLTNRSELIS---TRFTGATGRAFLFHKVVNLIYSEFRIV*C*QDVTWCVMF 303
           D +L + SE+ S   T +TG+     L   VVNL  S    + C  D TW + F
Sbjct: 410 DTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVNLSVSTVFNLLCGSDTTWIINF 463


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  FNFQINLSVLTKLNFKKWVKYFLIILEERDYF 136
           FN  I  S +TK+NF +  KY + + + + +F
Sbjct: 163 FNSSILFSSITKINFSRGYKYRIQLTDGKIWF 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,233
Number of Sequences: 5004
Number of extensions: 42480
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)