Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40246
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153     63   2e-10
12_02_0358 - 17948460-17948687,17949442-17949534                       61   8e-10
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031     61   8e-10
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     59   3e-09
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    45   6e-05
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043...    29   3.2  
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    27   9.7  

>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
          Length = 123

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/54 (46%), Positives = 38/54 (70%)
 Frame = +3

Query: 258 QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 419
           +DR ++TG H V D+ C++C   LGW YE A EE+Q+YKEG+ I E+A + + +
Sbjct: 69  EDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKEN 122


>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +3

Query: 258 QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 419
           +DR ++TG H V D+ C +C   LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 52  EDRQLMTGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 121 GTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLI 246
           G R++SC +C  ++    ++IS  F G  GRAFLF   +N++
Sbjct: 6   GPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVV 47


>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
          Length = 119

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 258 QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 401
           +DR ++TG H V+D+ C  C   LGW YE A EE+++YKEG+ ILE+A
Sbjct: 65  EDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKA 112



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 130 LFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNL 243
           +  C  C V+  +   ++S  F G  GRA+LF  VVN+
Sbjct: 22  VLKCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNI 59


>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +3

Query: 258 QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 407
           +DR+++TG H V D+ C  C   LGW YE A  E+Q+YKEG+ ILE+ ++
Sbjct: 57  EDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = +1

Query: 91  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNL 243
           MG +F++ + G ++F C  C V+  +   ++S  F G  GRA+LF  VVN+
Sbjct: 1   MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNV 51


>03_05_0798 +
           27798095-27798190,27798325-27798366,27799152-27799190,
           27799238-27799420
          Length = 119

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = +1

Query: 91  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSE-FRIV 267
           MG++F+ H+ G +++SC  C  +L   S++IS  F    G+A+LF+K+  L Y+   RI+
Sbjct: 1   MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKLKLLAYNTVLRII 59

Query: 268 *C 273
            C
Sbjct: 60  VC 61


>01_05_0627 +
           23802235-23802853,23803357-23803430,23804207-23804364,
           23804640-23804964
          Length = 391

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 318 HSSYKKHHAPCDVLLASHDPELRID*IH 235
           H    +HH+PC V +A   PE  I+ +H
Sbjct: 307 HGRQCQHHSPCRVRMARQSPEKLIELLH 334


>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 210 SCILIPQGCESNLFGVQDRVMLTGRHMVRDVSCKNCGTKL-GWVYEFATEENQRYK 374
           SC+L    C+   +GV+ RV   GRH   D S +     L G+  E + +E Q+ +
Sbjct: 206 SCLLDTLKCDGAGWGVRRRVRYIGRH--HDASKEASAASLDGYNTEVSVQEEQQQR 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,901
Number of Sequences: 37544
Number of extensions: 235399
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)