Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40246
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)       64   7e-11
SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)                58   6e-09
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)                 29   4.3  
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   28   5.7  
SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_3861| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  

>SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)
          Length = 972

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +3

Query: 258  QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIE 428
            ++RV+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G E
Sbjct: 916  EERVLLTGLHAVSDIFCECCKTTLGWKYEHAFEISQKYKEGKYIIEMAHMIKDNGWE 972


>SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)
          Length = 93

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +3

Query: 258 QDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 407
           ++R +LTG H+V D+ C  C T +GW Y  A EE ++YK G+ ILERA +
Sbjct: 10  EERTLLTGVHVVADLYCNKCATYVGWKYIDAYEEKEKYKVGKFILERAKI 59


>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
          Length = 399

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 423 YHHSR*PRLVPILLSLPCIFDSLQ*QIHIPNPASYHSSYKKHHAPCDVLLASH 265
           YHH + P     + SLP I   L   I I +   +H  + KHH P D ++  H
Sbjct: 217 YHHHKHP--TRWMASLPAIA-ILTNTITIHHHLHHHYHHHKHHHPVDGIITGH 266


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 242  RFTTLWNKNARPVAPVNRVLINSERFVRLTSHDAHENSRVPPI*SRNILP 93
            RF  +  +   P   V   L++     +L SH AH  S V P+   N+LP
Sbjct: 1162 RFCAVVRREGFPEDDVMSELVHQPSTFKLVSHPAHTISIVAPVVLINLLP 1211


>SB_15980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 DRVMLTGRHMVRDVSCKNCGTKLG 332
           DR+  T  +  R + C +CG KLG
Sbjct: 102 DRIQATAENTSRSMFCSHCGRKLG 125


>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 DRVMLTGRHMVRDVSCKNCGTKLG 332
           DR+  T  +  R + C +CG KLG
Sbjct: 720 DRIQATAENTSRSMFCSHCGRKLG 743


>SB_3861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 DRVMLTGRHMVRDVSCKNCGTKLG 332
           DR+  T  +  R + C +CG KLG
Sbjct: 33  DRIQATAENTSRSMFCSHCGRKLG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,766
Number of Sequences: 59808
Number of extensions: 298404
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)