Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    79   4e-16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.27 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   4.4  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.7  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 35/76 (46%), Positives = 51/76 (67%)
 Frame = +2

Query: 278 KRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDY 457
           K+A KG+    T Y+TKDI++LLHEPI+ K RE KV+ +K+ +A  + E    ++     
Sbjct: 51  KKANKGSTAPVTFYYTKDIQYLLHEPIVQKFREYKVFARKLSKALGKGELETAKRLEARK 110

Query: 458 PEINIDHIVKERYPTF 505
           P  ++DHI+KERYPTF
Sbjct: 111 PTYSLDHIIKERYPTF 126



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 556 STFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSV 678
           ST P   K+       C RL  EF H VI + +LRK F+S+
Sbjct: 144 STMPVTDKIGAATVANCERLCAEFQHYVIRSNSLRKAFLSI 184



 Score = 31.9 bits (69), Expect = 0.088
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 156 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGITPENLETERGLKK 293
           +G    ++TR            DFRRICILKG+ P   + ++   K
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANK 55


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 508 NKRGVSFLYYVINVYFWIVPQKLS 437
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/87 (20%), Positives = 36/87 (41%)
 Frame = -1

Query: 656 RALAAITACMNSTVSLLHKNDWSLGTFFNDGKVLNRKHNVRQSSKSRKA*QTWGIFPLLC 477
           + L  ++   NST+ L ++ +  L T   D  V  +++ +  SSK +        F   C
Sbjct: 489 KILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGC 548

Query: 476 DQCLFLDSPAKTFSSCHILAVLLHDEF 396
            + + +    +T     +   +LH  F
Sbjct: 549 QKAVIVSQYKETLELIELFLSILHVRF 575


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 470 IDHIVKERYPTFVMLCEIWMIVS 538
           + +++ +RYPTF++L  I+ ++S
Sbjct: 477 LGNLISKRYPTFILLPIIFSMIS 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,159
Number of Sequences: 5004
Number of extensions: 59464
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)