Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300...    72   4e-13
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    30   1.5  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    30   1.5  
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    28   6.0  

>03_05_0803 +
           27829438-27829461,27829558-27829643,27829960-27830088,
           27830806-27830925,27831007-27831132,27831349-27831433,
           27831538-27831648,27832215-27832308,27832448-27832728,
           27832840-27832947,27833163-27833284,27833825-27834035,
           27834149-27834376,27834591-27834680
          Length = 604

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/74 (43%), Positives = 48/74 (64%)
 Frame = +2

Query: 287 QKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEI 466
           +K  G  KT YH KDI FL H+P+I K RE+KV+++K+++A A++      + L   P  
Sbjct: 52  KKVEGNHKTYYHMKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNRPPTY 111

Query: 467 NIDHIVKERYPTFV 508
            +D ++ ERYPTFV
Sbjct: 112 KLDRLILERYPTFV 125



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 159 GEGAQFMTRXXXXXXXXXXXXDFRRICILKGITPENLETERGLKKVQAESKHFITLK 329
           G  A+++TR             FR++CILKG+ P + +     KKV+   K +  +K
Sbjct: 14  GNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPK-----KKVEGNHKTYYHMK 65


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 520 LAKHNKRGVSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 362
           +AK   + +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 289 VAKTPAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 341


>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 520 LAKHNKRGVSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 362
           +AK   + +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 603 VAKTPAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 655


>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 68  QTTKQKTFTYYFLNKDNNHNGVQKEEEVFFRRRSSVYDQKSSA*ETTT 211
           +T K++      LNK  + +G+Q  E+ + R RS + D K S+  ++T
Sbjct: 50  ETAKKQQLIDLDLNKKISQSGLQLIEQNYNRTRSFIIDAKKSSTRSST 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,300
Number of Sequences: 37544
Number of extensions: 322290
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)