Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   6e-15
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       28   8.0  

>SB_41092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 34/77 (44%), Positives = 52/77 (67%)
 Frame = +2

Query: 278 KRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDY 457
           K+  KG+   KT Y+ KDI++L HEP++ K RE KV+ +K+++A A+ + G   +   + 
Sbjct: 18  KKVNKGSTANKTYYYVKDIQWLAHEPVLNKFREFKVFLRKLKKAIAKEQPGTADRLEDNK 77

Query: 458 PEINIDHIVKERYPTFV 508
           P   +DHIVKERYPTF+
Sbjct: 78  PVYTLDHIVKERYPTFI 94


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 532 NHPNLAKHNKRGVSFLYYVINVYFWIVPQKLSHLA 428
           NHP+ A H    + FLY V+     +V    SH++
Sbjct: 725 NHPSNANHPNHSLCFLYLVVTCKVRLVLYASSHIS 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,012,215
Number of Sequences: 59808
Number of extensions: 393856
Number of successful extensions: 952
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)