Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid deplete...    81   5e-16
Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    35   0.062
AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical ...    29   3.1  
U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid depleted
           protein 7 protein.
          Length = 531

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
 Frame = +2

Query: 278 KRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDY 457
           K+A KG+   K  Y+ KDI FL HEPII K R+ KV+ +K+   +A++E  K++K   + 
Sbjct: 52  KQANKGSTANKVFYYRKDINFLAHEPIINKFRDYKVFLRKLNHLKAKKEEDKLKKLYENK 111

Query: 458 PEINIDHIVKERYPTF-VMLCEIWMIVSHCASYSVLSH 568
           P  ++D IVKER+PTF   L ++   +S C ++++L H
Sbjct: 112 PVYSLDTIVKERFPTFGSALRDMDDALSLCFTFAMLPH 149



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 150 YSSGEGAQFMTRXXXXXXXXXXXXDFRRICILKGITPENLETERGLKKVQAESKHFITLK 329
           Y++G    +M+R            DFRR+CI+KGI P     ++   K    +K F   K
Sbjct: 9   YTAGAAVAYMSRKQALKKLQLTLKDFRRLCIIKGIYPHEPAHKKQANKGSTANKVFYYRK 68

Query: 330 I*NF 341
             NF
Sbjct: 69  DINF 72



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 604 CRRLTVEFMHAVIAAKALRKVFVSV 678
           CR+LT EFMH VI +++LR  F+S+
Sbjct: 161 CRKLTAEFMHYVIESQSLRNTFISI 185


>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -2

Query: 520 LAKHNKRGVSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLL 389
           ++K +KR   ++  + N++F+I+P  L  + I+ L SC +N LL
Sbjct: 4   ISKISKRKSIYILIISNIFFFIIPLYLIVIGIWKLTSCPSNQLL 47


>AF106573-3|AAF02106.1|  198|Caenorhabditis elegans Hypothetical
           protein F52D2.10 protein.
          Length = 198

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 331 IFSVIKCFDSACTFLSPLSVSRFSGVIPFKIQIRLKSFKDSCSFLS 194
           +F+     D+   F+  L  S+FS V    I +R+ +FKDSCS LS
Sbjct: 83  VFNNHSRLDNIEYFIDYLKRSKFSSVKG--ISLRMFTFKDSCSILS 126


>U23511-5|AAC46794.1|  578|Caenorhabditis elegans Hypothetical
           protein C32D5.6 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 290 KGAGGIKTLYHT-KDIKFLLHEPIIWKLRELKVYQQ 394
           KGA  I+T Y T +  + L++EP +W  R  KV +Q
Sbjct: 164 KGALNIRTCYQTYRYCEKLMNEPSVWVGRNKKVQEQ 199


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 174 TELLLRKNTSSSFWTPL*LLSLFRK*YVKVFCLVVWNI 61
           T  ++  N   S W P+   ++F   Y K+F   VW I
Sbjct: 97  THFIISLNRFISVWCPIFYKTMFNLKYTKLFIFAVWLI 134


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = -2

Query: 496 VSFLYYVINVYFWIVPQ------KLSHLAIFSLCSCTTNFLLIN 383
           +S LYY+ N+Y  I  +      K+ H AI++ C  ++ +++I+
Sbjct: 30  ISILYYIFNLYVTIRVKHYKNNIKILHQAIYATCPFSSAYIIID 73


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 410 RAQREYGKMRKF--LRDYPEINIDHIVKERYPTFVMLCEIWMIVSHCASYSVLSHH*K-- 577
           RA+ EY  +  F  +R+Y EI    +V E+    +  C+++  V  C   +V + + K  
Sbjct: 458 RAEIEYLGLLGFRNIRNYAEIAYKKVVAEKMKRTLRTCDMYDAVEICLMLAVFNGYPKLA 517

Query: 578 KFQETNHSC 604
            F  T  +C
Sbjct: 518 AFLHTQKAC 526


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,713
Number of Sequences: 27780
Number of extensions: 321411
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)