Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    29   0.041
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 503 TWGIFPLLCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDKPLVPS 369
           TW + P+LCD  + LD    T S   + A+ +     V +PL+ S
Sbjct: 103 TWELGPMLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYS 147


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/63 (20%), Positives = 26/63 (41%)
 Frame = +1

Query: 307 QNTLSH*RYKIFTTRANNMETEGTKGLSTKNSSCKSTARIWQDEKVFAGLSRNKH*SHSK 486
           +N  +H +  +    +   E   +K ++    +C  +  IW+  K      R +  S S 
Sbjct: 285 ENETAHIKDSLIVLTSALQEMNKSKSITEPPKNCADSGSIWETGKNLFEFIRKQVLSGST 344

Query: 487 GKI 495
           GK+
Sbjct: 345 GKV 347


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 472 NVYFWIVPQKLSHLAIFSLCSCTTNFLLIN 383
           N Y WIV  K   +A   L     NF ++N
Sbjct: 370 NEYIWIVSNKYQKIANGDLNFNEVNFRILN 399


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 490 FLYYVINVYFWIV 452
           FL+ V+NV +WI+
Sbjct: 411 FLFAVLNVTYWIM 423


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -1

Query: 503 TWGIFPLLCDQCLFLDSPAKTFSSCHILAVLLHDEFFVDKPL 378
           +W +   +CD  + +D    T S  +++A+ +     V +P+
Sbjct: 251 SWSLPGFVCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPI 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,560
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)