Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40244
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    78   6e-15
At3g09660.1 68416.m01145 minichromosome maintenance family prote...    29   3.8  
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /...    29   3.8  
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    28   5.0  
At3g12120.1 68416.m01508 omega-6 fatty acid desaturase, endoplas...    27   8.7  
At1g08990.1 68414.m01003 glycogenin glucosyltransferase (glycoge...    27   8.7  

>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 32/74 (43%), Positives = 49/74 (66%)
 Frame = +2

Query: 287 QKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEI 466
           +K  G   T YH KDI FL+HEP++ K RE+K YQ+K+++A+A++     R  L   P  
Sbjct: 52  KKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKKVKKAKAKKNEELARLLLTRQPTY 111

Query: 467 NIDHIVKERYPTFV 508
            +D +++ERYPTF+
Sbjct: 112 KLDRLIRERYPTFI 125



 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +1

Query: 604 CRRLTVEFMHAVIAAKALRKVFVSV 678
           CRRLT E+   +  + ALRKVFVSV
Sbjct: 160 CRRLTHEWQAYISRSHALRKVFVSV 184



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 159 GEGAQFMTRXXXXXXXXXXXXDFRRICILKGITP 260
           G  A++MTR             FRR+CI+KGI P
Sbjct: 14  GNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFP 47


>At3g09660.1 68416.m01145 minichromosome maintenance family protein
           / MCM family protein similar to SP|P49717 DNA
           replication licensing factor MCM4 (CDC21 homolog) {Mus
           musculus}; contains Pfam profile PF00493: MCM2/3/5
           family
          Length = 777

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 641 ITACMNSTVSLLHKNDWSLGTFFNDGKVLNRKHNVRQSSKSRK 513
           +  CMN+ V  +  + W    F N  K+  R HN  +SS S K
Sbjct: 104 VIPCMNAAVHKVLFDQWETNEFENVMKINVRLHNYPESSISLK 146


>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
           general transcription factor TFIIB-1 (TFIIB1) identical
           to transcription initiation factor IIB-1 (TFIIB1)
           SP:P48512 from [Arabidopsis thaliana]
          Length = 312

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 35  CEIIIDAHSIFQTTKQKTFTYYFLNKDNNHNG 130
           C +++++HSI +T++ +TF     N D N  G
Sbjct: 29  CGLVLESHSIDETSEWRTFANESSNSDPNRVG 60


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
           protein (PAKRP1)
          Length = 1292

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 286 SKRCRRNQNTLSH*RYKIFTTRANNMETEGTKGLSTKNSSCKSTAR 423
           SK+     + LS  + K+F  R   + +   KG+    S C+STA+
Sbjct: 719 SKKMNNCSSALSTQKSKVFPVRTERLASSLHKGIKLLESYCQSTAQ 764


>At3g12120.1 68416.m01508 omega-6 fatty acid desaturase, endoplasmic
           reticulum (FAD2) / delta-12 desaturase identical to
           omega-6 fatty acid desaturase, endoplasmic reticulum
           (FAD2) SP:P46313 [Arabidopsis thaliana (Mouse-ear
           cress)] (Plant Cell 6:147-158(1994))
          Length = 383

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 493 SFLYYVINVYFWIVPQKLSHLA 428
           S  YYV   YF ++PQ LS+LA
Sbjct: 64  SCFYYVATNYFSLLPQPLSYLA 85


>At1g08990.1 68414.m01003 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
           Oryctolagus cuniculus [SP|P13280]
          Length = 424

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 362 WKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINI 472
           W L+  +VY  +   AR  + Y KM K L+ Y  +N+
Sbjct: 350 WDLKTRRVYASESVHARWWKVYDKMPKKLKGYCGLNL 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,718
Number of Sequences: 28952
Number of extensions: 288177
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)