Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40243
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    71   2e-13
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.9  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.4  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   5.8  

>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
 Frame = +2

Query: 263 NMWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIP----S 430
           ++WVFGYGSLIW     Y+  +  +I GY RRF+  S DHRG    PG V+TLIP     
Sbjct: 9   SLWVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWK 68

Query: 431 KFP-------NSTVWGVAYRIRAEDIDEVTKHL 508
           +F        +   WG+A+RI A+   +V ++L
Sbjct: 69  QFSDWSFTPFDEGCWGMAFRIPAKYATQVREYL 101


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -2

Query: 70 IALLFFYKNKYSIFVLILQIFE 5
          +++L +YKN YS F+ +LQ+++
Sbjct: 33 LSILPYYKNSYSDFISVLQMYK 54


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 340 NIAY*LSLILEVRFPN*GTIPKNPHIIN 257
           NI Y +++IL   F     IP++PH+++
Sbjct: 200 NIRYTIAVILHFSFVTVDAIPESPHLVS 227


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 386 LCDRHYVDKIFFYSLK 339
           +C R+ V KI FYSLK
Sbjct: 11  ICSRYIVSKISFYSLK 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,498
Number of Sequences: 5004
Number of extensions: 61444
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)