Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40243
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769...    80   2e-15
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307...    53   2e-07
01_05_0029 + 17345520-17345765,17345883-17346638                       31   0.84 
08_02_0622 + 19422001-19422330,19422411-19422459,19422552-194227...    29   3.4  
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    28   6.0  

>02_03_0153 -
           15776359-15776516,15776742-15776821,15776912-15776983,
           15777070-15777110,15777201-15777257,15777344-15777400,
           15778441-15778517,15778652-15778760
          Length = 216

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/86 (41%), Positives = 50/86 (58%)
 Frame = +2

Query: 266 MWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSKFPNS 445
           +WVFGYGSLIW   F ++ K++G++ GYKR F    +DHRG PE P R  TL   +   +
Sbjct: 3   LWVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDE--EA 60

Query: 446 TVWGVAYRIRAEDIDEVTKHLILEKR 523
             WG+AY ++     E      LE+R
Sbjct: 61  ICWGIAYCVKGGLKKEQEAMKYLERR 86



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 613 NESYAGPAAIEDIAQQVVTS 672
           N+ Y GPA +ED+A+Q+ T+
Sbjct: 124 NKYYLGPAPLEDMARQIATA 143


>04_04_0043 -
           22330282-22330410,22330484-22330568,22330602-22330724,
           22330839-22330879,22331081-22331137,22331530-22331583,
           22331646-22331650,22332392-22332500
          Length = 200

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +2

Query: 266 MWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQ 367
           MWVFGYGSL+W   F ++ +LVG++  Y+R FYQ
Sbjct: 3   MWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQ 36


>01_05_0029 + 17345520-17345765,17345883-17346638
          Length = 333

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 493 SNQTFNFREKNGYSKKTVTFHPNNSEYLPFPLTL--YVAVEENESYAGP 633
           S+ T  F EK+G     VT      E +PF  T+   VA  + ES+ GP
Sbjct: 183 SDGTIKFEEKDGIDYAAVTVQLPGGERVPFLFTIKNLVATGKPESFGGP 231


>08_02_0622 +
           19422001-19422330,19422411-19422459,19422552-19422759,
           19422832-19423006,19423101-19423166,19423264-19423377,
           19423473-19423589,19423677-19423803,19423893-19424179,
           19424279-19424469,19424571-19424656,19424749-19424825,
           19425057-19425200
          Length = 656

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 579 W*IFAIIWMEC-DSFLRITILFSKIKCLVTSSISSALILYAT--PHTVLLGNLLGIKV 415
           W +  + ++ C  +F  +     +I  L+  SIS A IL     P TVLLGNL G  +
Sbjct: 462 WKVDKMDFISCMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTVLLGNLPGTTI 519


>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 350 KRRFYQHSVDHRGVPEKPGRVVTLIPSKFPNSTVWGVAYR 469
           K R++Q   D R   +KP R+ TL     PN  VW  +YR
Sbjct: 822 KGRYWQKVADER--KKKPFRI-TLADKNAPNEEVWRQSYR 858


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,159
Number of Sequences: 37544
Number of extensions: 319076
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)