Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40243
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24978| Best HMM Match : ChaC (HMM E-Value=0)                        87   9e-18
SB_27799| Best HMM Match : ChaC (HMM E-Value=0)                        79   2e-15
SB_258| Best HMM Match : TPR_1 (HMM E-Value=0.82)                      29   4.6  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38)                  28   6.1  

>SB_24978| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 189

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 40/90 (44%), Positives = 58/90 (64%)
 Frame = +2

Query: 254 EINNMWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSK 433
           E  ++W+FGYGSL+WK +F Y+ K+ GYI GY R+FYQ S DHRGVP K           
Sbjct: 10  EGQDLWIFGYGSLVWKVNFPYKKKVAGYIKGYVRKFYQGSCDHRGVPGK----------- 58

Query: 434 FPNSTVWGVAYRIRAEDIDEVTKHLILEKR 523
              STVWG++Y++ A+D   V ++L + ++
Sbjct: 59  ---STVWGISYQVDAQDEPSVLRYLDIREK 85



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +1

Query: 508 NFREKNGYSKKTVTFHPNNSEYLPFPLTLYVAVEENESYAGPAAIEDIAQQVVTS 672
           + REK+GY+    TFHP+ +    F + LYVA +ENE Y GPA + +IA Q+  S
Sbjct: 81  DIREKDGYTAGFTTFHPSGNLEEQFQVMLYVATQENEFYLGPAPLPEIAYQIAHS 135


>SB_27799| Best HMM Match : ChaC (HMM E-Value=0)
          Length = 216

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 44/96 (45%), Positives = 58/96 (60%)
 Frame = +2

Query: 248 YLEINNMWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIP 427
           Y   +++WVFGYGSLIWK DF YE  +VG+I G++R+F+Q SV HRG  E+ G+      
Sbjct: 17  YSSSDSIWVFGYGSLIWKPDFTYERSVVGHIRGFERKFWQGSVWHRG-NEETGQ------ 69

Query: 428 SKFPNSTVWGVAYRIRAEDIDEVTKHLILEKRMVIL 535
                  VWGVAY++  EDID       L KR + L
Sbjct: 70  -------VWGVAYKVSGEDIDTALGR--LNKREIAL 96



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 526 GYSKKTVTFHPNNSEYLPFPLTLYVAVEENESYAGPAAIEDIAQQVVTS 672
           GY    +TF+P +    PF   LY A  EN  Y G    E +A Q+V++
Sbjct: 98  GYELHNLTFYPQDQSLEPFNALLYAATPENSLYFGKETPEKLALQIVSA 146


>SB_258| Best HMM Match : TPR_1 (HMM E-Value=0.82)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 547 TFHPNNSEYLPFPLTLYVAVEENESYAGPAAI 642
           T H +  E+L F  ++YVA++E +   G AAI
Sbjct: 119 TQHQDKQEHLGFLQSIYVALDEPDGVVGVAAI 150


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 132 LSYIKFISYLC---WYCHPVWTLQLHFCFFTKISTL 34
           +S++  +S+LC   W CH +W  Q H      +S+L
Sbjct: 60  VSWVHHVSWLCHERWLCHVIW--QFHVSLLFHVSSL 93


>SB_15238| Best HMM Match : PPTA (HMM E-Value=2.9e-38)
          Length = 183

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 437 PNSTVWGVAYRIRAEDIDEVTKHLILEKRMVILRKLSHSIQ 559
           PN  V  +AY IR +D+ +  + ++   R ++LR LS  +Q
Sbjct: 34  PNPVV-AIAYSIRFKDVYDYFRAVLKHYRRLVLRALSKDLQ 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,225,348
Number of Sequences: 59808
Number of extensions: 406754
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)