Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40243
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical ...    70   1e-12
AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    29   4.1  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine re...    27   9.4  
AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine re...    27   9.4  

>AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical
           protein F22F7.7 protein.
          Length = 232

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/70 (45%), Positives = 42/70 (60%)
 Frame = +2

Query: 263 NMWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSKFPN 442
           ++W+FGYGSLIW   F + T    Y +G+ RR YQ +  HRG  + PGRV TLI     N
Sbjct: 49  SLWIFGYGSLIWNPGFTFSTSRKAYAIGWARRMYQGNTYHRGDEKLPGRVATLIEE--TN 106

Query: 443 STVWGVAYRI 472
           S   GV +R+
Sbjct: 107 SYTNGVVFRV 116


>AF067949-2|AAC19235.1|  357|Caenorhabditis elegans Hypothetical
           protein T10H9.1 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -3

Query: 570 FAIIWMECDSFLRI---TILFSKIKCLVTSSISSALILYATPHTVLLGNLLGI 421
           FA++W   D    I    I  ++I C+ TSS   A  LY    T+  G LL +
Sbjct: 143 FAVLWGLGDMVFLIFEDDIFMTRIHCVTTSSSGPAFHLYFLLSTIFFGVLLSL 195


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 162 NL*PQLIII*LSYIKFISYLCWYCHPVWTLQLHFCFFTKISTLYLF*FCKFL 7
           N    L +I + ++ F++ L    H  W++ + +  F+    LYLF FCKFL
Sbjct: 52  NFLTHLDMITMYFVLFLNIL----HSNWSINILYSVFSLTIVLYLF-FCKFL 98


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 333 PTSLVSYLKSAFQIKEPYPKTHILLISRYLQQ 238
           PT L+ YL S   +  PYP T+  LIS  LQQ
Sbjct: 81  PTVLLQYLYSTTTVPRPYPTTNPKLIS--LQQ 110


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 233  TNCCRYLEINNMWVFGYGSLIWKADFKYETKLVGYIL 343
            TN   YL+ NN++ +    ++   DFK+ET+ +  IL
Sbjct: 1202 TNFLLYLDANNLYGWAMCQMLPTGDFKFETQSLISIL 1238


>AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform a protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +2

Query: 242 CRYLEINNMWVFGY------GSLIWKADF-KYETKLVGYIL 343
           CR+  I + WVF +       +++W ADF KY + ++  ++
Sbjct: 125 CRFYYIEDFWVFTFSTTPVCNTIVWYADFLKYNSIVISIVI 165


>AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform b protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
 Frame = +2

Query: 242 CRYLEINNMWVFGY------GSLIWKADF-KYETKLVGYIL 343
           CR+  I + WVF +       +++W ADF KY + ++  ++
Sbjct: 136 CRFYYIEDFWVFTFSTTPVCNTIVWYADFLKYNSIVISIVI 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,313
Number of Sequences: 27780
Number of extensions: 331673
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)