Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40243
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44790.1 68414.m05131 ChaC-like family protein contains Pfam ...    86   2e-17
At4g31290.1 68417.m04440 ChaC-like family protein contains Pfam ...    82   4e-16
At5g26220.1 68418.m03121 ChaC-like family protein contains Pfam ...    81   7e-16
At5g11960.1 68418.m01399 expressed protein                             29   3.8  

>At1g44790.1 68414.m05131 ChaC-like family protein contains Pfam
           profile: PF04752 ChaC-like protein
          Length = 199

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 266 MWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSKFPNS 445
           MWVFGYGSLIWK  F ++  L G+I GY+R F+Q S DHRG P+ PGR VTL  +     
Sbjct: 3   MWVFGYGSLIWKTGFPFDESLPGFIKGYRRVFHQGSTDHRGTPDFPGRTVTLEAAH--EE 60

Query: 446 TVWGVAYRI-RAEDIDEVTKHLILEKR 523
              GVAY+I + ED  +   HL + ++
Sbjct: 61  VCCGVAYKITKEEDKRDALLHLEVREK 87



 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +1

Query: 514 REKNGYSKKTVTFHP--NNSEYLPFPLTLYVAVEE---NESYAGPAAIEDIAQQVV 666
           REK    K+ + F    N SE     + +Y+A  +   N +Y GPA +EDIA+Q+V
Sbjct: 85  REKQYDQKEYLDFFTDSNASEPAVAGVMVYIASPDKKSNNNYLGPAPLEDIAKQIV 140


>At4g31290.1 68417.m04440 ChaC-like family protein contains Pfam
           profile: PF04752 ChaC-like protein
          Length = 227

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 39/86 (45%), Positives = 49/86 (56%)
 Frame = +2

Query: 266 MWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSKFPNS 445
           MWVFGYGSL+W   F Y+ K++G+I GYKR F    +DHRG PE P R  TL   K   +
Sbjct: 3   MWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDLACIDHRGTPEHPARTCTL--EKAEEA 60

Query: 446 TVWGVAYRIRAEDIDEVTKHLILEKR 523
             WG A+ +R     E      LE+R
Sbjct: 61  ICWGTAFCVRGGPEKERLAMEYLERR 86



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 613 NESYAGPAAIEDIAQQVVTS 672
           N+ Y GPA +ED+A+Q+ T+
Sbjct: 124 NKYYLGPAPLEDMARQIATA 143


>At5g26220.1 68418.m03121 ChaC-like family protein contains Pfam
           profile: PF04752 ChaC-like protein
          Length = 216

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 40/86 (46%), Positives = 48/86 (55%)
 Frame = +2

Query: 266 MWVFGYGSLIWKADFKYETKLVGYILGYKRRFYQHSVDHRGVPEKPGRVVTLIPSKFPNS 445
           +WVFGYGSLIW   F ++ KL+GYI  YKR F    +DHRG PE P R  TL  S    +
Sbjct: 3   LWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEQS--TGA 60

Query: 446 TVWGVAYRIRAEDIDEVTKHLILEKR 523
             WG AY +R     E      LE+R
Sbjct: 61  ICWGAAYCVRGGPEKEKLAMEYLERR 86


>At5g11960.1 68418.m01399 expressed protein
          Length = 344

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 674 IDVTTCCAMSSIAAGPA*DSFSSTATYKVNGNGKYSLLFGW 552
           I V+TC A++SI  G     F+       + +G+  LL GW
Sbjct: 232 IVVSTCAAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGW 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,286
Number of Sequences: 28952
Number of extensions: 290388
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)