Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40242
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    31   0.18 
SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   0.94 
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.8  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   8.8  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 310 SSESKTLMTVDELKQRLTGDKFIIYINSVNEICLSTTLYDSKSGQKVSIFEPDEGAYDEV 489
           +S S+TL  V E +++    +        +E C+S++L        + + +  +G Y EV
Sbjct: 375 NSGSETLYAVKEFRRKPAESQKKYTKRLTSEFCISSSLRHPNVIHTLDLIQDGKGDYCEV 434

Query: 490 IQLCERSSL 516
           ++LC    L
Sbjct: 435 MELCSGGDL 443


>SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 451 SIFEPDEGAYDEVIQLCERSSLIITSDLL 537
           +I +P  G++DEV++LC+R  +I   + L
Sbjct: 85  AIIKPFYGSHDEVLRLCKRKRIIPLQNFL 113


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 286 MLGNNIRSVLL*NH*IFKFCYNFVSIIWQ*HFYL 185
           +LGNN  + L+ +  +   CY FVS+I    F++
Sbjct: 707 VLGNNYFTTLIFSSLLILACYAFVSLICMDPFFI 740


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 367 DKFIIYINSVNEICLSTTLYD--SKSGQKVSIFEPDEGAYDEVIQLCERSSLIITSDLLI 540
           D   +++ S+    ++T +Y   SKS  + S+   D    ++V  LC+     +TS    
Sbjct: 728 DYLDLFLTSLKPENVTTGMYSDTSKSQSQQSVTTID----NKVNLLCKIIREHLTSKYGD 783

Query: 541 YRMQRTLTGYTCKKPPMEIKSLQML 615
              Q  +T Y C+ PP    +L M+
Sbjct: 784 THFQAIITSYLCESPPKIEAALGMI 808


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 131 TVKYEDKIYRAILEDISSKIKVSLP---DYGNEIITK 232
           T K +D+I   ILE+  + IK  +P    YG  II++
Sbjct: 178 TAKNQDRISALILENTFTSIKDMIPTVFPYGGSIISR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,692
Number of Sequences: 5004
Number of extensions: 49964
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)