Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40242
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0140 - 12979580-12980158,12980297-12980479,12980721-129809... 29 2.2
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 28 6.8
01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796 28 6.8
11_06_0445 - 23679918-23680282,23680415-23683349 27 9.0
09_02_0177 - 5390594-5390692,5391924-5391998,5392843-5392942,539... 27 9.0
06_03_0537 - 21910241-21910805,21910943-21911157,21911240-21911341 27 9.0
06_02_0111 - 11958372-11958713,11959367-11959633,11959729-119601... 27 9.0
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 27 9.0
02_05_1247 + 35233756-35233785,35234902-35236107 27 9.0
>01_03_0140 -
12979580-12980158,12980297-12980479,12980721-12980914,
12980974-12980998
Length = 326
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 310 SSESKTLMTVDEL-KQRLTGDKFIIYINSVNEICLSTTLYDS 432
++ S TL+T D + L+GD ++ + + E+CLS +L+ S
Sbjct: 195 TTTSFTLLTTDRIWNMWLSGDPLLVSQSGLKELCLSFSLFKS 236
>11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 262 LSVYYYQALQCCLNNYSSESKTLMTVDELKQRLTG-DKFIIYINSVNEICLSTT 420
LS+Y AL+ L E+ +T +L RL+ KF+ + + E+CLS+T
Sbjct: 1230 LSLYLGNALENLLG-LLGETNGFLTTLKLHGRLSQFPKFVTSLTGIKELCLSST 1282
>01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796
Length = 854
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +1
Query: 337 VDELKQRLTGDKFIIYINSV------NEICLSTTLYDSKSGQKVSI 456
+DELKQ L G +++I IN++ + ICL+ L K G +V I
Sbjct: 159 IDELKQYLRGMRYLIVINNIWSESVWDTICLAFAL--RKCGSRVII 202
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 334 SLMFSIQNCSCLDNIAMLGNNIRSVL 257
+ M S+ NC+ L N+ + GNN++ VL
Sbjct: 426 TFMSSLTNCTQLQNLWLGGNNLQGVL 451
>09_02_0177 -
5390594-5390692,5391924-5391998,5392843-5392942,
5393143-5393244,5393335-5393444,5393896-5393968,
5394976-5395043,5395382-5395475,5396804-5397165
Length = 360
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 86 LTPLSADSLSEGVHCTVKYEDKIYRAILEDISSKIKVSLPDYGN--EIITKLENLM 247
L L+A++ SEG+ K Y +E++++++ +P Y N E I K E+ +
Sbjct: 161 LEKLAAENTSEGISSIAKGRLNEYSERIEELAARLASLVPGYENAVEAIRKEESYL 216
>06_03_0537 - 21910241-21910805,21910943-21911157,21911240-21911341
Length = 293
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 71 YDSTKLTPLSADSLSEGV--HCTVKYEDKIYRAILEDISSKIKVSLPDYGNEIITKLENL 244
Y+S L D++ V C+ Y + + + DI ++ +LP+Y E+I E L
Sbjct: 65 YNSETAKNLGPDNVVSNVDWECSFMYRHQP-ESNIHDIPELVRTTLPEYAEEVIKLAERL 123
Query: 245 M-ILQQN 262
++ +N
Sbjct: 124 AEVMSEN 130
>06_02_0111 -
11958372-11958713,11959367-11959633,11959729-11960124,
11961246-11961320
Length = 359
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 203 AMTLLSSTIYLLIWRDIFCLHILQCNEHPPKDCLHLEEL 87
A+TL+SST+ D + ++C + PP+ CL L +L
Sbjct: 65 ALTLISSTV------DAIHRYCMECAQPPPEMCLFLNDL 97
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 8 EKFYVQLDLEKAALVETAIADYDSTK-LTPLSADSLSEGVHCTVKY 142
E +VQ D+ A L E + Y+S+ L P + SLS+ + + K+
Sbjct: 313 EDCFVQTDINPAVLKEAKMFYYNSSALLEPTTRSSLSKAIEVSKKF 358
>02_05_1247 + 35233756-35233785,35234902-35236107
Length = 411
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 262 LSVYYYQALQCCLNNYSSESKTLMTVDELKQRLTG 366
L YY ++CCLN SS S T + +R G
Sbjct: 157 LLTYYIFVIRCCLNWNSSSSSDTRTAGLISRRRRG 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,117
Number of Sequences: 37544
Number of extensions: 268892
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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