Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40242
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       38   0.005
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005
SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)                28   7.0  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 41  AALVETAIADYDSTKLTPLSADSLSEGVHCTVKY--EDKIYRAILEDISSKIKVSLPDYG 214
           A L+      Y ST+  P  A     G+ C  ++   +K YR  +E     I++  PDYG
Sbjct: 660 AELIRNMECHYTSTQYPPFYA---VPGMICAAQFTLNNKWYRGYIESCDGGIQIYYPDYG 716

Query: 215 NEIITKLENLMILQQN 262
           N  I  +  L  L+QN
Sbjct: 717 NTEIIDVSRLRPLEQN 732


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 41   AALVETAIADYDSTKLTPLSADSLSEGVHCTVKY--EDKIYRAILEDISSKIKVSLPDYG 214
            A L+      Y ST+  P  A     G+ C  ++   +K YR  +E     I++  PDYG
Sbjct: 2024 AELIRNMECHYTSTQYPPFYA---VPGMICAAQFTLNNKWYRGYIESCDGGIQIYYPDYG 2080

Query: 215  NEIITKLENLMILQQN 262
            N  I  +  L  L+QN
Sbjct: 2081 NTEIIDVSRLRPLEQN 2096


>SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)
          Length = 560

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 76  QYQVNSSKCRQSFGGCSLHCKI 141
           +Y+ + + CR++FGGCS  C +
Sbjct: 234 EYKHSQTCCRRAFGGCSECCNV 255


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 560 KVLCMR*ISKSEVIIKDDRSHSCITS 483
           KVLC   ISK    + DDR ++C+ S
Sbjct: 879 KVLCAPDISKPATALGDDRLYTCVES 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,789,093
Number of Sequences: 59808
Number of extensions: 341714
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)