Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40242
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    31   0.50 
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    31   0.87 
AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical ...    31   0.87 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    29   2.7  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    29   2.7  
Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    28   6.1  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    27   8.1  

>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 26  LDLEKAALVETAIADYDSTKLTPLSADSLSEGVHCTVKYEDKIYRAILEDISSK--IKVS 199
           L   + +++E   A Y ST++     D +   V C V+     YR  +  IS +  + V 
Sbjct: 97  LSTARKSIMEQLNATYQSTQVAEFQEDQIFVPVACAVQELGIWYRGRIAQISGEAHVVVE 156

Query: 200 LPDYGNEIITKLENLMIL 253
           L D+G +I+     ++ L
Sbjct: 157 LIDFGTQILVPRHKVLPL 174


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 602 DFISIGGFLHVYPVKVLCMR*ISKSEVIIKDDRSHSCITSSYAPSSGSN 456
           +++ +GG  HVY + +  M  I++ E    D+   +C   S  P+S  N
Sbjct: 55  EYVLLGGRNHVYNISISSMLEIARYEWTSSDEARTNCAAISQTPASCEN 103


>AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.16 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +1

Query: 298 LNNYSSESKTLMTVDELKQRLTGDKFIIYINSVNEICLSTTLYDSKSGQKVSIF 459
           + N S ES  +   D L  R T  K II+ NS+N+I L+T       G+K   F
Sbjct: 160 MGNVSVES-AIRIRDNLLPRSTFKKCIIWFNSINQIELATVFQPGYFGRKEYTF 212


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 250 FTTELSVYYYQALQCCLNNYSSESKTLMTVDELKQRLTGDKFIIYINSVNEIC 408
           F  +  +YYY   +C LN+ + ESK  + + E ++ L  D F I  +   E C
Sbjct: 353 FVCKSVMYYYNEQECILNSETRESKPELFIPEGEEFLV-DYFDITCHLKQEKC 404


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 250 FTTELSVYYYQALQCCLNNYSSESKTLMTVDELKQRLTGDKFIIYINSVNEIC 408
           F  +  +YYY   +C LN+ + ESK  + + E ++ L  D F I  +   E C
Sbjct: 353 FVCKSVMYYYNEQECILNSETRESKPELFIPEGEEFLV-DYFDITCHLKQEKC 404


>Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical
           protein T03F7.3 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -3

Query: 611 IWSDFISIGGFLHVYPVKVLCMR*ISKSEVIIKDDRSHSCITSSYAPSSGSNIDTF*PLL 432
           I + F  I  F   Y + V C+  +  S V + ++R +  +TS++  SS +   +F  + 
Sbjct: 91  ILTRFFDINAFFQTY-LAVACIAEVGSSIVFMFENRQNQTVTSNWKISSATGRKSFVSIN 149

Query: 431 LSYKVVERHIS 399
           L +  V   IS
Sbjct: 150 LVFPWVASTIS 160


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +2

Query: 11   KFYVQLDLEKAALVETAIADYDSTKLTPLSADSLSEGVHCTVKYEDKIYRAILEDISSKI 190
            KF+ +   E AAL+ T    Y+S +      D++   +  +VK    + R  LE ++SK 
Sbjct: 1118 KFHQRSPAELAALLSTLTCQYNSGREMQFGGDTVFGEISESVK--SVLTR--LESVASKH 1173

Query: 191  KVSLPDYGNEI 223
            K  + D G EI
Sbjct: 1174 KSQISDLGCEI 1184


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 253 TTELSVYYYQALQCCLNNYSSESKTLMTVDELKQRLTGDKF-IIYINSVNEICLSTTLY 426
           TT L   YY   +C L+ Y S    ++++   +Q +  DK  ++YIN  N I  ++ LY
Sbjct: 22  TTTLDELYYYGAECVLSCYVS----VVSICNTQQFVVIDKIALLYINCDNLIPKASKLY 76


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 388 NSVNEI--CLSTTLYDSKSGQKVSIFEPDEGAYDEVIQLCERSSLIITSDLLIYRMQRTL 561
           N VNE   C++T +  +   QK++ FE     + ++ +   RSS++  S   I   +   
Sbjct: 293 NLVNETFNCITTVISFAAQKQKINKFEKLSAEHSKLTEERLRSSVVFDSLTQILLTELIF 352

Query: 562 TGYTC 576
           TG  C
Sbjct: 353 TGALC 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,196
Number of Sequences: 27780
Number of extensions: 269651
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)