Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40242
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31300.1 68414.m03830 expressed protein similar to hypothetic...    29   1.9  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     27   7.5  
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil...    27   7.5  
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil...    27   7.5  

>At1g31300.1 68414.m03830 expressed protein similar to hypothetical
           protein GB:AAF24587 GI:6692122 from [Arabidopsis
           thaliana]
          Length = 278

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 508 TAHIVVSLHHTLPHLVQILILSDHFYCHTKL*RGIF 401
           T   + S HH   HLV+  +L+D F  +T +  GIF
Sbjct: 8   TIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIF 43


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 107 SLSEGVHCTVKYEDKIYRAIL---EDISSKIKVSLPDYGNEIITKLENLMILQ 256
           +L+ G+   V + D  +  +L   E+ S K +V  PD G+E+   L++L I Q
Sbjct: 106 NLAYGLCVDVFFSDAWWEGVLFDHENGSEKRRVFFPDLGDELDADLQSLRITQ 158


>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS8) similar to LACS 4 [SP|O35547] from Rattus
           norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
           contains Pfam HMM hit: AMP-binding enzymes PF00501
          Length = 720

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 364 GDKFIIYINSVNEICLSTTLYDSKSGQKVSIFEPDEGAYDEVIQLCERSSLIITSDL 534
           G++ +IY  S+NE  +ST + DSK  +K+S  +        +I + E    + +SD+
Sbjct: 189 GEEALIY--SLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDV 243


>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS8) similar to LACS 4 [SP|O35547] from Rattus
           norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
           contains Pfam HMM hit: AMP-binding enzymes PF00501
          Length = 720

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 364 GDKFIIYINSVNEICLSTTLYDSKSGQKVSIFEPDEGAYDEVIQLCERSSLIITSDL 534
           G++ +IY  S+NE  +ST + DSK  +K+S  +        +I + E    + +SD+
Sbjct: 189 GEEALIY--SLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDV 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,170
Number of Sequences: 28952
Number of extensions: 238454
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)