Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40241
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    27   3.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.6  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   8.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.8  

>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 3   EKTLFSFGAIESNRNIEDLINMSGLRSVQVVNVNDNHNYVLEDNTLQRILLREDVKDLPL 182
           E  L+S   ++  R  E   + SG+R + ++   D+H   L ++ +  I  R    + P 
Sbjct: 109 EIALWSLIRVDDQRLFELCHSKSGIRLLSIIFDFDSHPDWLREDVMFNIAERILKSNFPN 168

Query: 183 VVVSVAA 203
           V+V+VA+
Sbjct: 169 VLVNVAS 175


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 483 ICALYPNIVVQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGSK 614
           +  L+P +V   Y+L E ++  DL+    + ++GK  K +D  K
Sbjct: 784 VLILHP-LVRDYYSLDELMEMSDLRKGGFWEKFGKAFKGKDAEK 826


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 506 DIRVESANIMEQSRTVLLESKVPCVSINSTATFSPAAVVVINGSGY 369
           +  +E  +  +    VLLESK   +     +TF   A ++++G G+
Sbjct: 164 EAEIEELSTADDVDDVLLESKYEELDDMDPSTFEAKAAMILHGLGF 209


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 334 GGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQG 441
           G   +HTT +LM   P + T  A E    L   T+G
Sbjct: 746 GAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKG 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,227
Number of Sequences: 5004
Number of extensions: 52848
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)