Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40241
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0479 - 16420948-16421238,16421519-16421764,16422676-164228...    29   3.0  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    29   3.0  
04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362...    29   5.2  
11_02_0149 - 8801675-8804332                                           28   6.9  

>04_03_0479 -
           16420948-16421238,16421519-16421764,16422676-16422811,
           16422903-16423121,16423715-16423748,16424092-16424335
          Length = 389

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 271 RNENGDWLGNETDPLIGFSWKGGS--ERHT-TGILMYPEPFITTTAAGEKVAVLLMDTQG 441
           ++++G W  + T   +G S+      E +T + +L Y E    T     K+ VL++    
Sbjct: 88  KDDDGRWWKDLTG-YVGLSYLRDRLVESYTWSQMLFYEEGLALTRIIFTKIIVLMVIMDD 146

Query: 442 TFDSSSTVRDC 474
           T+DS +T+++C
Sbjct: 147 TYDSHATIQEC 157


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 365 SMPVVCLSDPPFQLNPIKGSVSFP 294
           S+P+ C+SDP  +  P+K  VSFP
Sbjct: 140 SLPLACISDPMKKPVPLKLDVSFP 163


>04_03_0481 +
           16433648-16433746,16435136-16435394,16435883-16436261,
           16436498-16436716,16436814-16436949,16437502-16437717,
           16437773-16437835
          Length = 456

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 361 ILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDC 474
           +L Y E    T     K+ VL++    T+DS +T+++C
Sbjct: 273 MLFYEEGLAFTRITFTKIIVLIIMMDDTYDSHATIQEC 310


>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 552 LQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDW 650
           L+YL+L +EY K+      S+ +++++ +++DW
Sbjct: 112 LRYLKLGSEYDKISPPRCISRFYKLIVLVLKDW 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,943
Number of Sequences: 37544
Number of extensions: 339869
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)