Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40241
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37041| Best HMM Match : GBP (HMM E-Value=0)                        110   1e-24
SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)                   30   2.3  
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   5.4  
SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
          Length = 466

 Score =  110 bits (265), Expect = 1e-24
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = +1

Query: 286 DWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTV 465
           DWLG ET+ L GFSW+GGSER TTGILM+ +P+I     GE+V VLLMDTQG FDSSSTV
Sbjct: 5   DWLGGETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTV 64

Query: 466 RDCSIIFALSTL 501
           +DC+ IFALST+
Sbjct: 65  KDCATIFALSTM 76



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 513 QIYN-LKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFG 677
           Q+ N +K  L  ++++  Q+  E     +N++  K FQ L+FL+RDW + YE  +G
Sbjct: 100 QVNNEIKPFLLNNEIKPFQVNNEIKPFQENKE-IKPFQRLLFLVRDWSFPYEANYG 154


>SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +3

Query: 360 HTNVSGAIYHHYSCRRKGGSAVNGYTRHLRLQQHSARLLHNICALYPNIVVQIYNLKENL 539
           H  V   ++H    +R     VN  + HL++ + S+ L  N  + +  +  +++NLK N 
Sbjct: 115 HLKVDKRLFHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRLFNLKVNK 174

Query: 540 QEDDLQYLQLFTEYGK 587
           +   L+   +F+  G+
Sbjct: 175 RYSHLKVNTIFSPEGE 190


>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +1

Query: 352 TTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTVRDCSIIFALSTL 501
           T GI M+ +P       G++VA++ +DT+G   ++ +    + +FA++TL
Sbjct: 155 TMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATL 204


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 262 TEKRNE-NGDWLGNETDPLIGFSWKGGSERH 351
           +EK NE  G+  GN  D  +   W GGSE H
Sbjct: 785 SEKTNEIGGESSGNRKDKSVAKMWGGGSECH 815


>SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 262 TEKRNE-NGDWLGNETDPLIGFSWKGGSERH 351
           +EK NE  G+  GN  D  +   W GGSE H
Sbjct: 388 SEKTNEIGGESSGNRKDKSVAKMWGGGSECH 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,915
Number of Sequences: 59808
Number of extensions: 390831
Number of successful extensions: 1087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)