Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40241
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...   101   4e-22
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...   101   4e-22
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...   101   4e-22
Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical pr...    77   2e-14
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    30   1.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    30   1.5  
U28412-4|AAC46593.1|  269|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50027-4|CAA90334.1|  105|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81553-6|CAB04495.1|  388|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z83125-3|CAB05626.1|  424|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...    28   8.2  
U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical p...    28   8.2  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = +1

Query: 277 ENGDWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSS 456
           +N  W+ +   PL GFSW+GGSER T GIL++ EPFI     GE++AVLLMDTQG FDS 
Sbjct: 107 DNSQWM-SPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQ 165

Query: 457 STVRDCSIIFALSTL 501
           STV+DC+ IFALST+
Sbjct: 166 STVKDCATIFALSTM 180



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = +3

Query: 510 VQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGGQ 683
           VQIYNL +N+QEDDLQ+LQLFTEYG+L   +  SK FQ L+FL+RDW + YE  FG Q
Sbjct: 184 VQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQ 241



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 45  NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVA 200
           ++ED++     ++V+VV V  + +H++ L    L++ILL   V D  + V+ VA
Sbjct: 20  HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVA 73



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 224 FLLSYFLRYLTHRRKSETKM 283
           FLL++FLRYLT R K++  M
Sbjct: 82  FLLNFFLRYLTWRSKADKVM 101


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = +1

Query: 277 ENGDWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSS 456
           +N  W+ +   PL GFSW+GGSER T GIL++ EPFI     GE++AVLLMDTQG FDS 
Sbjct: 107 DNSQWM-SPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQ 165

Query: 457 STVRDCSIIFALSTL 501
           STV+DC+ IFALST+
Sbjct: 166 STVKDCATIFALSTM 180



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = +3

Query: 510 VQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGGQ 683
           VQIYNL +N+QEDDLQ+LQLFTEYG+L   +  SK FQ L+FL+RDW + YE  FG Q
Sbjct: 184 VQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQ 241



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 45  NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVA 200
           ++ED++     ++V+VV V  + +H++ L    L++ILL   V D  + V+ VA
Sbjct: 20  HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVA 73



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 224 FLLSYFLRYLTHRRKSETKM 283
           FLL++FLRYLT R K++  M
Sbjct: 82  FLLNFFLRYLTWRSKADKVM 101


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score =  101 bits (243), Expect = 4e-22
 Identities = 46/75 (61%), Positives = 57/75 (76%)
 Frame = +1

Query: 277 ENGDWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQGTFDSS 456
           +N  W+ +   PL GFSW+GGSER T GIL++ EPFI     GE++AVLLMDTQG FDS 
Sbjct: 107 DNSQWM-SPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQ 165

Query: 457 STVRDCSIIFALSTL 501
           STV+DC+ IFALST+
Sbjct: 166 STVKDCATIFALSTM 180



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 37/58 (63%), Positives = 45/58 (77%)
 Frame = +3

Query: 510 VQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIRDWPYYYEHAFGGQ 683
           VQIYNL +N+QEDDLQ+LQLFTEYG+L   +  SK FQ L+FL+RDW + YE  FG Q
Sbjct: 184 VQIYNLSQNIQEDDLQHLQLFTEYGRLALEDSASKPFQSLLFLVRDWSFPYEAEFGFQ 241



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 45  NIEDLINMSGLRSVQVVNV--NDNHNYVLEDNTLQRILLREDVKDLPLVVVSVA 200
           ++ED++     ++V+VV V  + +H++ L    L++ILL   V D  + V+ VA
Sbjct: 20  HVEDVLLPKEPQAVRVVEVVEDTDHSFELNTELLEKILLDPKVADKKVAVIGVA 73



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 224 FLLSYFLRYLTHRRKSETKM 283
           FLL++FLRYLT R K++  M
Sbjct: 82  FLLNFFLRYLTWRSKADKVM 101


>Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical
           protein Y41E3.3 protein.
          Length = 520

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 34/80 (42%), Positives = 54/80 (67%)
 Frame = +1

Query: 262 TEKRNENGDWLGNETDPLIGFSWKGGSERHTTGILMYPEPFITTTAAGEKVAVLLMDTQG 441
           +++ + + +WL ++   L GF W+ G +R T GI ++ EP +  +  GE  AV+LMDTQG
Sbjct: 94  SQQSDSSLEWLTDDCQ-LHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQG 152

Query: 442 TFDSSSTVRDCSIIFALSTL 501
           TFD++ST + C  +FALST+
Sbjct: 153 TFDNNSTYQQCMTVFALSTI 172



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
 Frame = +3

Query: 510 VQIYNLKENLQEDDLQYLQLFTEYGKLLKNE--DGSKAFQMLMFLIRDWPYYYEHAFG 677
           VQIYN+ +N+QED LQ+L LF EYG++   +  +  K FQ L+F +RD+    E+ FG
Sbjct: 176 VQIYNVVDNIQEDALQHLSLFVEYGRIAMEQPHNFGKPFQQLVFCVRDFKNQEEYEFG 233


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 714  VSFLIASSPSFGHRKHV-HNSKANL**GTLASETLWSRLR 598
            VS L  SS +FG  + +  N  AN+  G + SETL  RLR
Sbjct: 2628 VSSLCTSSETFGFDQRIFRNQNANISLGAVRSETLLQRLR 2667


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 714  VSFLIASSPSFGHRKHV-HNSKANL**GTLASETLWSRLR 598
            VS L  SS +FG  + +  N  AN+  G + SETL  RLR
Sbjct: 2628 VSSLCTSSETFGFDQRIFRNQNANISLGAVRSETLLQRLR 2667


>U28412-4|AAC46593.1|  269|Caenorhabditis elegans Hypothetical
           protein T19C3.2 protein.
          Length = 269

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 486 CALYPNIVVQIYNLKENLQE--DDLQYLQLFTEY 581
           C L+PN  +++ N+ E++Q+  D+L YLQ   E+
Sbjct: 153 CKLWPNPEIKLPNVTESMQQIIDNLDYLQCVPEH 186


>Z50027-4|CAA90334.1|  105|Caenorhabditis elegans Hypothetical
           protein C39B10.5 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +3

Query: 405 RKGGSAVNGYTRHLRLQQHSARLLHNICALYPNIVVQIYNLKENLQEDDLQYLQLFTEYG 584
           R+  + V     H  +Q+   R L    A++  I        +NL E    Y     E  
Sbjct: 5   RESNAIVEAIMNHFDVQEKVVRELKKRIAVHEEIYANKDKYIDNLFEF---YGTAMAEMN 61

Query: 585 KLL--KNEDGSKAFQMLMFLIRDWPYYYEHAFGG 680
             L  KNE+     + L F+ ++    YEH FGG
Sbjct: 62  NQLLQKNEENRLLKEKLGFMDKEIAKMYEHVFGG 95


>Z81553-6|CAB04495.1|  388|Caenorhabditis elegans Hypothetical
           protein F56H6.6 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 471 LLHNIC-ALYP-NIVVQIYNLKENLQEDDLQYLQLFTEYGK 587
           L++ +C A Y  N++  ++N+ + ++EDD  Y ++ T + K
Sbjct: 317 LIYGLCRANYTFNLLSHVFNVHQGIKEDDTMYSKVVTAHSK 357


>Z83125-3|CAB05626.1|  424|Caenorhabditis elegans Hypothetical
           protein T15D6.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 471 LLHNIC-ALYP-NIVVQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMFLIR 644
           L++ +C A Y  N++  ++N+ + ++EDD  Y ++ T + K           + L F  R
Sbjct: 289 LIYKLCRANYTFNLLSHVFNVHKGIKEDDTMYSKVVTAHTKQFWK------MRYLFFCCR 342

Query: 645 DWPYY 659
           ++P Y
Sbjct: 343 EFPRY 347


>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 459 HSARLLHNICALYPNIVVQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGS 611
           H + LLH +CA+   I   I+N  E    D +      +EY K L+ EDGS
Sbjct: 97  HDSHLLHTLCAVQTLI---IFNSIEKADADTI------SEYVKGLQQEDGS 138


>U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical
           protein B0280.1a protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 459 HSARLLHNICALYPNIVVQIYNLKENLQEDDLQYLQLFTEYGKLLKNEDGS 611
           H + LLH +CA+   I   I+N  E    D +      +EY K L+ EDGS
Sbjct: 97  HDSHLLHTLCAVQTLI---IFNSIEKADADTI------SEYVKGLQQEDGS 138


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 479 MEQSRTVLLESKVPCVSINSTATFSPAAVVVINGSGYISMPVVCLSDPPFQLNPIKGSVS 300
           M +  T+++   V   +I   AT S +A     G G  S+ +  L  PP +  P+    S
Sbjct: 1   MNKRPTMIIPPTVEISTIIDVATPSSSADTENRGDGESSVFIGQLQHPPLRRRPVSAMAS 60

Query: 299 FP 294
            P
Sbjct: 61  LP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,060
Number of Sequences: 27780
Number of extensions: 292613
Number of successful extensions: 758
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)