Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40241
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32960.1 68416.m04176 hypothetical protein                          30   1.4  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    29   3.3  
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac...    29   3.3  
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    28   7.7  
At3g07530.1 68416.m00899 expressed protein ; expression supporte...    28   7.7  

>At3g32960.1 68416.m04176 hypothetical protein 
          Length = 214

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 TEKRNENGDWLGNETDPLIGFSWKGGSERHTTGILMY 372
           +E+R EN +    E D   G+SW    +RHTT +L++
Sbjct: 11  SEEREENEE----ENDEDTGYSWAKTKQRHTTDVLLH 43


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 477 HNICALYPNIVVQIYNLKENL----QEDDLQYLQLFTEYGKLLKN 599
           H+IC +YP  +   Y+L+  L    Q  +++ +    EYG + KN
Sbjct: 59  HDICHVYPRKLTHPYHLQHPLTLTTQNTEIEIISKNPEYGYIFKN 103


>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
           acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
           GI:8515709
          Length = 675

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
 Frame = +1

Query: 328 WKGGSERHTTGILMYPEPFITTTAAGEKVAVL-LMDTQGTFDSSSTVRDCSIIFALSTLX 504
           W GG+  H T  +++ +  I  T  G    +  + D  G+   +  + DC     L+ + 
Sbjct: 226 WIGGAANHATHTIVFSQLHINGTNQGVHAFIAQIRDQDGSICPNIRIADCGHKIGLNGVD 285

Query: 505 XXXXXXXXXXXXXXTIFNTYSYLPSTGNYLKT-KTAPKRF 621
                          + N  + + S G Y+ + K   +RF
Sbjct: 286 NGRIWFDNLRIPRENLLNAVADVSSDGKYVSSIKDPDQRF 325


>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = +3

Query: 366 NVSGAIYHHYSCRRKGGSAVNGYTRHL----RLQQHSA-RLLHNICALYPNIVVQIYNLK 530
           N+   +   +S  +K G A+  +TR L    R  + S   LL  +  L     V  Y LK
Sbjct: 419 NIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLK 478

Query: 531 ENLQEDDLQYLQLFTEYGKLLKNEDGSKAFQMLMF 635
             L  D      LFT Y K    E+  K FQ + F
Sbjct: 479 SGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPF 513


>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 367 MYPEPFITTTAAGEKVAVLLMDTQGTFDSSSTV 465
           +Y    +TT  AG+ V +L   T  TFDSS  V
Sbjct: 467 LYGPALVTTKDAGDAVTLLQSLTGSTFDSSQLV 499


>At3g07530.1 68416.m00899 expressed protein ; expression supported
           by MPSS
          Length = 699

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 705 LIASSPSFGHRKHVHNSKANL 643
           LI+  PSFGH K + N K +L
Sbjct: 406 LISGEPSFGHLKFIKNKKIHL 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,385
Number of Sequences: 28952
Number of extensions: 273005
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)