Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40239
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 214 NAFFPYCECLHLNKSASRLGFSVI 285
           NAF   C C   N S +R G S +
Sbjct: 325 NAFKETCRCSPSNPSITRTGLSSV 348


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 553 YLFFLNYDRPFFIVST*ESLGRQRGE 630
           Y FFL    PF++ S    L   RGE
Sbjct: 232 YYFFLRQAFPFWLPSKEYDLPDYRGE 257


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 553 YLFFLNYDRPFFIVST*ESLGRQRGE 630
           Y FFL    PF++ S    L   RGE
Sbjct: 232 YYFFLRQAFPFWLPSKEYDLPDYRGE 257


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 262 SRLGFSVIYLLF 297
           SR+GF ++++LF
Sbjct: 366 SRIGFPILFMLF 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,597
Number of Sequences: 438
Number of extensions: 3228
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)