Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40238
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.9  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   6.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 366 NYEVIDSSLNDIKYVLNPTFTPEQIKLIDTNTKMSRAIDGT 488
           N +V+D S N+I  V    F P ++ L+      ++ ++ T
Sbjct: 224 NIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNAT 264


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 360 PDNYEVIDSSLNDIKYVLNPT 422
           P+ Y++ D   N+IK V N T
Sbjct: 440 PNTYQIADPVTNEIKGVYNMT 460


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 366 NYEVIDSSLNDIKYVLNPTFTPEQIKL 446
           N ++ID S  +  Y+  P F P+Q ++
Sbjct: 38  NSQMIDYSRPNWSYLRTPQFEPQQFEV 64


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 366 NYEVIDSSLNDIKYVLNPTFTPEQIKL 446
           N ++ID S  +  Y+  P F P+Q ++
Sbjct: 58  NSQMIDYSRPNWSYLRTPQFEPQQFEV 84


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 372 EVIDSSLNDIKYVL 413
           E I+S+LND +Y+L
Sbjct: 33  EAIESTLNDRRYLL 46


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 235 YACLVCGNIFREE 273
           Y+C +CG  FR +
Sbjct: 108 YSCDICGKAFRRQ 120


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 7   FQILHLTTLSKVYD 48
           F+ +HL+ L K YD
Sbjct: 83  FECIHLSVLHKCYD 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,750
Number of Sequences: 336
Number of extensions: 3476
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)